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. 2003 Jul;41(7):3100–3111. doi: 10.1128/JCM.41.7.3100-3111.2003

TABLE 2.

Distance matrix for the VP7 gene of United States and India strains and strain AU32

Constel- lation Strain Distancea for VP7 in strain of constellation:
A
B C
US1205 B41 At599 KC294b Ph301c EM39 De92d DV38 S25e Om526 De18 EM41 CC117 CC149 In826 In364 Se121 At694 DL75 Om46f AU32
A US1205 1.23 0.92 0.61 0.00 0.92 0.31 0.61 0.92 0.92 0.92 0.61 0.92 1.23 0.92 1.84 0.92 1.23 0.61 3.37 5.21
B41 0.97 0.92 1.23 1.23 1.53 0.92 1.23 0.92 1.53 1.53 1.53 1.53 1.84 1.53 1.84 0.92 1.23 1.23 3.99 5.83
At599 0.87 0.68 0.31 0.92 0.61 0.61 0.92 1.23 1.23 1.23 1.23 1.23 1.53 1.23 2.15 1.23 1.53 0.92 3.68 5.52
KC294 0.94 0.87 0.19 0.61 0.31 0.31 0.61 0.92 0.92 0.92 0.92 0.92 1.23 0.92 1.84 0.92 1.23 0.61 3.37 5.21
Ph301 0.38 0.97 0.68 0.66 0.92 0.31 0.61 0.92 0.92 0.92 0.61 0.92 1.23 0.92 1.84 0.92 1.23 0.61 3.37 5.21
EM39 1.14 1.06 0.39 0.19 0.86 0.61 0.92 1.23 1.23 1.23 1.23 1.23 1.53 1.23 2.15 1.23 1.53 0.92 3.37 5.21
De92 0.66 0.58 0.29 0.28 0.38 0.48 0.31 0.61 0.61 0.61 0.61 0.61 0.92 0.61 1.53 0.61 0.92 0.31 3.07 4.91
DV38 0.87 1.06 0.77 0.77 0.77 0.77 0.48 0.92 0.92 0.92 0.92 0.92 1.23 0.92 1.84 0.92 1.23 0.61 3.37 5.21
B S25 1.04 0.77 0.68 0.66 0.75 0.86 0.38 0.87 1.23 1.23 1.23 1.23 1.53 1.23 1.53 0.61 0.92 0.92 3.68 5.52
C Om526 1.15 1.06 0.77 0.77 0.87 0.96 0.48 0.96 0.87 0.61 1.23 1.23 1.53 1.23 2.15 1.23 1.53 0.92 3.68 5.52
De18 1.33 1.25 0.97 0.95 1.05 1.14 0.67 1.16 1.05 0.38 1.23 1.23 1.53 1.23 2.15 1.23 1.53 0.92 3.68 4.91
EM41 1.45 1.55 1.26 1.26 1.16 1.45 0.97 1.35 1.35 0.87 1.06 1.23 1.53 1.23 2.15 1.23 1.53 0.92 3.68 5.52
CC117 1.64 1.64 1.35 1.35 1.45 1.54 1.06 1.54 1.45 0.96 1.16 1.26 0.31 0.61 2.15 1.23 1.53 0.92 3.68 5.52
CC149 1.74 1.74 1.45 1.45 1.54 1.64 1.16 1.64 1.54 1.06 1.25 1.35 0.10 0.92 2.45 1.53 1.84 1.23 3.99 5.83
In826 1.52 1.45 1.16 1.14 1.24 1.33 0.86 1.35 1.24 0.77 0.95 1.06 0.77 0.87 2.15 1.23 1.23 0.92 3.68 5.52
In364 1.90 1.83 1.74 1.71 1.62 1.90 1.43 1.83 1.62 1.73 1.90 1.93 2.31 2.41 1.90 1.53 1.84 1.84 3.99 5.83
Se121 1.45 1.26 1.16 1.16 1.26 1.35 0.87 1.35 1.06 0.77 0.97 1.06 0.97 1.06 0.77 2.03 0.92 0.92 3.68 5.52
At694 1.45 1.25 1.16 1.16 1.25 1.35 0.87 1.35 1.06 0.77 0.97 1.06 1.16 1.25 0.97 1.93 0.77 1.23 3.99 5.83
DL75 1.14 1.06 0.77 0.76 0.86 0.95 0.48 0.96 0.86 0.38 0.57 0.68 0.77 0.87 0.57 1.71 0.58 0.58 3.37 5.21
Om46 9.43 9.75 9.65 9.51 9.42 9.71 9.23 9.84 9.61 9.62 9.32 9.95 9.45 9.55 9.32 9.90 9.47 10.04 9.51 3.68
AU32 10.74 11.30 11.21 10.93 10.93 11.05 10.65 11.00 10.84 10.78 10.29 10.82 10.62 10.71 10.67 11.43 11.03 10.82 10.48 9.90
a

Numbers above the diagonal are amino acid distances (substitutions per 100 amino acids); numbers below it are nucleotide distances (substitutions per 100 bp).

b

Strain KC294 had >99.5% deduced amino acid identity (100% similarity) and >99% nucleotide sequence identity to strains EM696, Ne458, SD126, KC268, and Ne413.

c

Strain Ph301 had 100% deduced amino acid identity and >99% nucleotide sequence identity to strain KC244.

d

Strain De92 had >99.3% deduced amino acid identity (100% similarity) and >99% nucleotide sequence identity to strains AC34, AC35, S16, DL73, S23, DV28, Ph158, BP7, SD768, AP6, AP13, SD412, and N23.

e

Strain S25 had 100% deduced amino acid identity and >99% nucleotide sequence identity to strain S18.

f

Strain Om46 had 100% deduced amino acid identity and >99% nucleotide sequence identity to strain Om67.