TABLE 1.
Regions of sequence ambiguity in sequence data sets
| Sample | Primer | Region to be resolveda | Gene affected |
|---|---|---|---|
| 03rg01 | A | 1-120b | PR and RT |
| 03rg02 | D | 1-50 | PR |
| F | 1-400 | ||
| 03rg03 | H | 1-600 | RT |
| 03rg04 | A | 1-600 | PR and RT |
| B | 1-40 | ||
| C | 1-70 | ||
| D | 1-600 | ||
| F | 1-30 | ||
| H | 1-50 | ||
| 03rg05 | A | 1-600 | PR |
| F | 350-410 | ||
| 03rg06 | H | 170-320 | RT |
a
The numbers refer to nucleotides starting with the first 5′ nucleotide of each primer sequence file.
b
Consensus sequence, bases 1027 to 1038. An insertion or deletion is present in the region from RT codons 244 to 247.