Table 3. Nucleotide frequencies matrix for a TSS-motif from 217 unrelated dicot plants' promotersa.
−4 | −3 | −2 | −1 | +1 | +2 | +3 | +4 | |
---|---|---|---|---|---|---|---|---|
A | 0.341 | 0.249 | 0.286 | 0.005 | 0.604 | 0.475 | 0.226 | 0.272 |
C | 0.184 | 0.286 | 0.041 | 0.507 | 0.332 | 0.028 | 0.359 | 0.240 |
G | 0.101 | 0.124 | 0.041 | 0.161 | 0.065 | 0.101 | 0.129 | 0.198 |
T | 0.373 | 0.341 | 0.631 | 0.327 | 0.000 | 0.396 | 0.286 | 0.290 |
W | n | T/a | C/t | A/c | w |
aIn 75 cases, the high scoring TSS coincided with the annotated TSS.