Table 4.
Enzyme | Product* | RecA† | % product surviving exonuclease I digestion after:‡
|
||
---|---|---|---|---|---|
6 min | 12 min | 18 min | |||
RecBCD | Chi | + | 79, 66 | 69, 67 | 54 |
− | <1, <1 | <1, <1 | <1 | ||
RecBC | Unw | + | 53, 60 | 49, 60 | 52 |
− | 1.7, 2.1 | 1.4, 1.3 | 2.1 | ||
RecBD1080ACD | Unw | + | 5.0, 3.2, 2.2 | 7.5, 3.1, 1.8 | 2.8 |
− | <1, <1, 1.2 | <1, <1, 1.3 | <1 | ||
RecBD1080AC | Unw | + | 44, 76, 41 | 46, 72, 47 | 58 |
− | 2.4, 3.6, 1.9 | 3.6, 2.9, 1.4 | 3.4 |
The major product from RecBCD wild-type or mutant enzyme reaction with linear pBR322 χ+F225 as described in the text. Chi is ssDNA labeled at the 5′ end and extending to the Chi site. Unw is full-length ssDNA labeled at the 5′ end.
Reactions were conducted in the absence (−) or presence (+) of 20 μM RecA protein by using the indicated enzyme. Multiple values are from independent experiments in which samples were taken at the indicated times. The reaction with RecBCD mutant or wild-type enzyme was for 2 min under conditions described in Materials and Methods. Exonuclease I was added and samples were removed at 6, 12, and 18 min (experiment 1) or at 6 and 12 min (experiments 2 and 3). Experiment 1 is shown in Fig. 2.
The percent of product present at the time listed after the addition of exonuclease I relative to the amount present at the end of the RecBCD enzyme reaction was determined by PhosphorImage analysis as described in Materials and Methods.