TABLE 3.
Primer pairs used in this study
| Primer pair function | Primer pair sequence (5′ to 3′)
|
|||
|---|---|---|---|---|
| Forward
|
Reverse
|
|||
| Name | Sequence | Name | Sequence | |
| RT-PCR gene linkage analysis | CpsA-f | CGTGATCCAGAATTGTTGATTCG | CpsB-r | CCTAACAACAACATTACAGTGACA |
| CpsB-f | GATGCTCGTATTGACGGTTCTGT | CpsC-r | TATGGCTTGATGTATACTATTCTCT | |
| CpsC-f | CAGGAACAACGTTTATATGTGCA | CpsD-r | CTTGCAATTGCTCAATCCCAATGG | |
| CpsD-f | ATTCCCAGCAGTTCGCATGAAT | CpsE-r | CAATGCTACATAATCGTCACTTTC | |
| CpsE-f | GTCGTTCGACAAAACCAAGGCT | CpsF-r | TATCTTTCTTTGGCGCCAGAGTGT | |
| CpsF-f | TTACGGTGATTGCTTCTGAAGC | CpsG-r | CAACCATTCCAGGGATTCCACATT | |
| CpsG-f | AAGGATGCACCCACTAACACATC | CpsH-r | CGTTTGCCATCCAATGTCCACAC | |
| CpsH-f | GTGTGGACATTGGATGGCAAACG | CpsI-r | GCACCATAGTCATGGACATTAA | |
| CpsI-f | AGAAGCCTATTATCCTGTTAATG | CpsJ-r | AAGCTTAGCACGCATACCGCTA | |
| CpsJ-f | AGAATCTAGGCAGCAGGAGGAAGTT | CpsK-r | TAGAGACCATGCCAACTTGCATA | |
| CpsK-f | TATCGTAGGAGCTCATTTACATG | Chp-r | CAACTGGCTGATTTCCTGCTTGTA | |
| Real-time RT-PCR | CpsAf-RT | GTTAAAGTCAATGTAATGGGCTACC | CpsAr-RT | CCCATAATTCAAAGCAAAGTTCAA |
| CpsBf-RT | ATTGTCTGGGCAACGGATATT | CpsBr-RT | ACGGCTGATAAAATACCACCA | |
| CpsCf-RT | GAGAATGTTCCTTTCGTCAAACG | CpsCr-RT | GCCACGTCTGTATATAGATTGTTG | |
| CpsIf-RT | AATGGCTACATCAATCAAGTAGTTG | CpsIr-RT | TTGCTTGTGCTTCAGCTGGT | |
| CpsKf-RT | GTCTAATTAATTCAACTATTGCTGCAT | CpsKr-RT | CCAAGACGGTAAATTCTTTGTAC | |
| Chpf-RT | GAGGCAGGCATTCCAATAA | Chpr-RT | GCCGTCAATTACCAACGTAT | |
| rRNAf-RT | GTAGTCCACAGCTTCGGTAATATGT | rRNAr-RT | AACTAGGATGTTGGCTTAGAAGCA | |