Table 1. Pre-steady-state kinetic constants for dNTP and rNTP incorporation by wild-type and F12A Dbha.
Protein/DNA | Kd (mM) | kpol (s–1) | kpol/Kd | Kd (mM) | kpol (s–1) | kpol/Kd | Selectivityb |
---|---|---|---|---|---|---|---|
DNA duplex A (non-frameshift) | 5′-TCGAAGCGACGGG | ||||||
3′-AGCTTCGCTGCCCCTTTCCATCA | |||||||
dGTP |
rGTP |
dG/rG | |||||
Wild-type | 0.37 ± 0.19 | (2.3 ± 0.9) × 10–2 | 62 | 0.77 ± 0.36 | (1.4 ± 0.3) × 10–5 | 1.8 × 10–2 | 3400 |
F12A | 0.95 ± 0.1 | (2.1 ± 0.5) × 10–3 | 2.2 | 1.3 ± 0.2 | (7.8 ± 1.4) × 10–4 | 0.6 | 3.7 |
DNA duplex B (frameshift) | 5′-GCATTTTCTGCTCCGG | ||||||
3′-CGTAAAAGACGAGGCCCGCC | |||||||
dCTP |
rCTP |
dC/rC | |||||
Wild-type | 0.46 ± 0.21 | (1.9 ± 1.1) × 10–2 | 41 | 0.58 ± 0.49 | (3.1 ± 2.9) × 10–6 | 5.3 × 10–3 | 7700 |
F12A | 1.6 ± 0.6 | (4.0 ± 2.0) × 10–4 | 0.25 | 3.3 ± 1.0 | (1.6 ± 0.5) × 10–4 | 0.05 | 5.0 |
aKinetic parameters are the average of at least two independent determinations and are reported as mean ± SD. The relatively large standard deviations in the case of rNTP incorporations by wild-type Dbh are a consequence of the extremely slow rates of these reactions.
bSelectivity was calculated as the ratio of kpol/Kd values (dNTP/rNTP).