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. 2003 Jul 15;31(14):4129–4137. doi: 10.1093/nar/gkg417

Table 1. Pre-steady-state kinetic constants for dNTP and rNTP incorporation by wild-type and F12A Dbha.

Protein/DNA Kd (mM) kpol (s–1) kpol/Kd Kd (mM) kpol (s–1) kpol/Kd Selectivityb
DNA duplex A (non-frameshift) 5′-TCGAAGCGACGGG
  3′-AGCTTCGCTGCCCCTTTCCATCA
  dGTP
rGTP
dG/rG
 Wild-type 0.37 ± 0.19 (2.3 ± 0.9) × 10–2 62 0.77 ± 0.36 (1.4 ± 0.3) × 10–5 1.8 × 10–2 3400
 F12A 0.95 ± 0.1 (2.1 ± 0.5) × 10–3 2.2 1.3 ± 0.2 (7.8 ± 1.4) × 10–4 0.6 3.7
DNA duplex B (frameshift) 5′-GCATTTTCTGCTCCGG
  3′-CGTAAAAGACGAGGCCCGCC
  dCTP
rCTP
dC/rC
 Wild-type 0.46 ± 0.21 (1.9 ± 1.1) × 10–2 41 0.58 ± 0.49 (3.1 ± 2.9) × 10–6 5.3 × 10–3 7700
 F12A 1.6 ± 0.6 (4.0 ± 2.0) × 10–4 0.25 3.3 ± 1.0 (1.6 ± 0.5) × 10–4 0.05 5.0

aKinetic parameters are the average of at least two independent determinations and are reported as mean ± SD. The relatively large standard deviations in the case of rNTP incorporations by wild-type Dbh are a consequence of the extremely slow rates of these reactions.

bSelectivity was calculated as the ratio of kpol/Kd values (dNTP/rNTP).