TABLE 2.
PCR type | Target | Primer sequencea | Annealing temp (°C) | No. of cycles | Product or amplicon size (bp) |
---|---|---|---|---|---|
RT | |||||
b-IL-8 | TGCCTAAACCCCAAGGAAAAGTG AACCCTACACCAGACCCACACAGAAC | 53.5 | 25 | 205 | |
b-GROα | GATTCACCTCAAGAACATCCAGAGC AGAACTGCCAAACACATTCACACC | 55.0 | 25 | 396 | |
b-GROγ | CAAAGAGGGAAAAGAGGAATCACC AAGGGCTGGCATAATGTGGG | 52.0 | 25 | 335 | |
b-GCP-2 | TTCGCCACTATGAGACTGCTATCC TCCAGACAGACTTCCCTTCCATTC | 60.0 | 25 | 284 | |
b-MCP-1 | AAACCAAACTCCAAAGCCTTGAG TTCTTGCGAGGACACTTCCACC | 52.5 | 25 | 335 | |
b-MCP-2 | ATTCTGTGTCTGCTGCTCGTGG TTCAAGGCTTCGGTGTTC | 55.3 | 25 | 283 | |
b-MIP-1α | TCTGCCCTTGCCTGTTGTTC TCGGTGATGTATTCCTGGACCC | 55.2 | 25 | 252 | |
b-RANTES | CCAGGAGTATTTCTACACCAGC AGCACTGAGGGTCTTTCACAGC | 56.5 | 25 | 298 | |
m-KC | TGGGATTCACCTCAAGAAC AGTGTTGTCAGAAGCCAGCG | 53.9 | 25 | 355 | |
m-MIP-2 | CCCAGACAGAAGTCATAGCCAC AATAAGTGAACTCTCAGACAGCG | 55.8 | 25 | 366 | |
m-GCP-2 | GGCATTTCTGTTGCTGTTCACG CTTTCTTCTCTTCACTGGGGTCAG | 56.3 | 25 | 343 | |
m-JE | GGAAAAATGGATCCACACCTTGC TCTCTTCCTCCACCACCATGCAG | 58.3 | 25 | 581 | |
m-MCP-2 | TGCTTCTTTGCCTGCTGCTC TGCTTGTAACATCTCTCTGCCTGG | 56.8 | 25 | 358 | |
m-MIP-1α | TGACCTGGAACTGAATGC TGTGACCAACTGGAGGGATG | 54.4 | 25 | 242 | |
m-RANTES | CATCCTCACTGCAGCCGCC CCAAGCTGGCTAGGACTAGAG | 56.2 | 25 | 319 | |
Real time | |||||
b-IL-8 | AAGTGGGTGCAGAAGGTTGTG GGAGCATGGGTTTTTCCTTTC | 79 | |||
b-GCP-2 | CCAGTGTCCCCAGGAAGCT GTCCAGGAGCCTTATGGAAGTCT | 103 | |||
b-GROα | TTACTTTTTGTAGAGAAGATTGTCAGTTGTT CCAAGGGATATTTAGATCATTGTCATT | 121 | |||
b-GROγ | TTGGATGGCTGTTCCAGAAGTA GCCTTAGGAGGTGGTGATTCCT | 78 | |||
b-GAPDH | TTCTGGCAAAGTGGACATCGT GCCTTGACTGTGCCGTTGA | 92 | |||
m-KC | ACCCAAACCGAAGTCATAGCC TTCAGGGTCAAGGCAAGCC | 60 | |||
m-MIP-2 | TGAGTGTGACGCCCCCA TTTTTGACCGCCCTTGAGAG | 71 | |||
m-GCP-2 | ACGCTGCGCAGCATCA GCTCCGTTGCGGCTATG | 59 |
Sequences for bovine and murine chemokine genes were obtained from GenBank. Top row, primer 1; bottom row, primer 2.