Table 1.

Simulation conditions for a binary phenotype, two marker loci M₁ and M₂, a single locus (Q), sample sizes n = 100, 500, recombination fraction and , respectively, and effect size. * = = 0.0 not simulated

Population	n			Effect Size	Number of combinations
Backcross	100, 500	0.0*, 0.10, 0.20, 0.30, 0.40, 0.50	0.0*, 0.10, 0.20, 0.30, 0.40, 0.50	0.40, 0.60, 0.80, 1.00	239*
F2	500	0.0*, 0.10, 0.20, 0.30, 0.40, 0.50	0.0*, 0.10, 0.20, 0.30, 0.40, 0.50	1.00	25