Table 1. Data collection, phasing, and refinement statistics.
Remote | Edge | Peak | |
---|---|---|---|
Data collection and phasing | |||
Wavelength, Å | 1.2565 | 1.2832 | 1.2825 |
Resolution, Å | 2.0 | 2.0 | 2.0 |
No. of total reflections | 497,657 | 364,430 | 299,731 |
No. of unique reflections* | 97,852 | 97,565 | 96,091 |
Completeness, % | |||
Overall | 100.0 | 99.9 | 98.5 |
Outer 0.1-Å shell | 100.0 | 99.9 | 93.1 |
Rmerge† | |||
Overall | 0.059 | 0.060 | 0.055 |
Outer 0.1-Å shell | 0.329 | 0.342 | 0.269 |
Mean figure of merit for MAD phasing‡ | 0.633 | ||
Refinement statistics | |||
No. of reflections, working set/testing set | 92,811/4,815 | ||
Data cutoff, σ | 0.0 | ||
R/Rfree§ | 0.199/0.211 | ||
No. of protein atoms | 4,316 | ||
No. of zinc ions | 7 | ||
No. of ligand atoms | 32 | ||
No. of water molecules | 309 | ||
rms deviations | |||
Bond lengths, Å | 0.006 | ||
Bond angles, ° | 1.3 | ||
Proper dihedral angles, ° | 23.5 | ||
Improper dihedral angles, ° | 0.7 |
Friedel mates are treated as unique reflections for data reduction in MAD experiments
Rmerge = ,
where I is the observed intensity and
is the
average intensity calculated for replicate data
Mean figure of merit =
, where
Δαi is the error in the phase angle for
reflection i, and n is the number of reflections
R =
,
where
and
are
the observed and calculated structure factor amplitudes, respectively.
Rfree is calculated in the same manner for reflections in
the test set excluded from refinement