TABLE 2.
ORFs selected by genome localization analysis
| ChIP template(s) in microarraya | % Expts hitb | No. of ORFs | No. of ORFs with introns (%)c |
|---|---|---|---|
| U1 snRNP vs genomic DNA | 100 | 77 | 71 (92) |
| ≥80 | 103 | 93 (90) | |
| ≥60 | 125 | 104 (83) | |
| ≥40 | 161 | 118 (73) | |
| RNA Pol II vs genomic DNA | 100 | 141 | 72 (51) |
| ≥67 | 234 | 103 (44) |
a
Indicates Cy3- and Cy5-labeled template pairs applied to microarray.
b
Indicates the percentage of experiments (five for U1 snRNP, three for RNA Pol II) in which an ORF received a score >2 SD away from the mean of the population.
c
Indicates the number of selected ORFs which either contain introns or are ≤500 nt away from an intron-containing ORF on the same or opposite strand.