Table II.
Comparisons of the cDNA and predicted protein sequences of GBSSI from barley
Group 1 | 56 78 | 100 121 | 178 186 | 205 213 | 562 570 | 856 864 |
Vogelsanger Gold | ACCGACAGA . . . . . . TTCCGGCGTCCAGGT | AACCCGGCGGATGCGGCGCTT | GGGAGCCGG | GTGAGCGCC | CAGCAGCGC | ATTGACGGC |
(X07932) | T D R . . . . F R R P G | N P A D A A L | G S R | V S A | Q Q R | I D G |
CDC Alamo | ACCGACAGA . . . . . . TTCCGGCGTCCAGGT | AACCCGGCGGATGCGGCGCTT | GGGAGCCGG | GTGAGCGCC | CAGCAGCGC | ATTGTCGGC |
(AF486519) | T D R . . . . F R R P G | N P A D A A L | G S R | V S A | Q Q R | I V G |
Oderbrucker | ACCGACAGA . . . . . . TTCCGGCGTCCAGGT | AACCCGGCGGATGCGGCGCTT | GGGAGCCGG | GTGAGCGCC | CAGCAGCGC | ATTGACGGC |
(AF486514) | T D R . . . . F R R P G | N P A D A A L | G S R | V S A | Q Q R | I D G |
Group 2 | 56 93 | 115 136 | 193 101 | 220 228 | 577 585 | 871 879 |
Iyatomi Mochi | ACCGACAGGTCGGCGCCGTCCATGTTCCGGCATGCTGGT | AAGCCCGCAGATGGGACGTTT | GGGAACCGG | GTGCGTGCC | CAGCAGCGC | ATTGACGGC |
(AF486517) | T D R S A P S M F R E A G | K P A D G T F | G N R | V R A | Q Q R | I D G |
Waxy Oderbrucker | ACCGACAGGTCGGCGCCGTCCATGTTCCGGCATGCTGGT | AAGCCCGCAGATGGGACGTTT | GGGAACCGG | GTGCGTGCC | CAGCAGCGC | ATTGACGGC |
(AF486515) | T D R S A P S M F R H A G | K P A D G T F | G N R | V R A | Q Q R | I D G |
SB85750 | ACCGACAGGTCGGCGCCGTCCATGTTCCGGCATGCTGGT | AAGCCCGCAGATGGGACGTTT | GGGAACCGG | GTGCGTGCC | CAGCAGCGC | ATTGACGGC |
(AF486518) | T D R S A P S M F R H A G | K P A D G T F | G N R | V R A | Q Q R | I D G |
Shikoku Hadaka | ACCGACAGGTCGGCGCCGTCCATGTTCCGGCATGCTGGT | AAGCCCGCAGATGGGACGTTT | GGGAACCGG | GTGCGTGCC | CAGCAGCGC | ATTGACGGC |
(AF486520) | T D R S A P S M F R H A G | K P A D G T F | G N R | V R A | Q Q R | I D G |
Yon M Kei | ACCGACAGGTCGGCGCCGTCCATGTTCCGGCATGCTGGT | AAGCCCGCAGATGGGACGTTT | GGGAACCGG | GTGCGTGCC | CAGTAGCGC | ATTGACGGC |
(AF486516) | T D R S A P S M F R E A G | K P A D G T F | G N R | V R A | Q * R | I D G |
Sequences of six regions of GBSSI cDNA from different barley cultivars are compared in the six columns. The GenBank accession nos. for the cDNA sequences are given in parentheses. The positions of the bases relative to the start of translation are indicated. Bases in the cDNA sequences that vary are underlined. Amino acids in the protein sequences that vary are shown in bold. The stop codon in the Yon M Kei protein sequence is indicated by an asterisk.