TABLE 2.
Quantitative trait loci for diabetes-associated traits identified by multiple-marker QTL analysis
| QTL | Marker ± SI (Mb)a | Trait | LRb | Nominal P-value | Effectc ± SE | Vard % | No. of genese |
|---|---|---|---|---|---|---|---|
| Niddm1i1 | D1Rat83 + 0.8 | Bw | 11.0** | 1 × 10−3 | −6.8 ± 2.0 | 5.1 | 13 |
| Niddm1i2 | D1Swe2 ± 0.25 | G15 | 8.5* | 3 × 10−3 | +2.4 ± 0.8 | 4.0 | 2 |
| G30 | 4.1 | 0.04 | +1.4 ± 0.7 | 2.0 | |||
| Niddm1i3 | D1Got244 ± 0.2 | G15 | 8.3* | 4 × 10−3 | −2.6 ± 0.9 | 3.9 | 1 |
| G30 | 4.3 | 0.04 | −1.5 ± 0.7 | 2.1 | |||
| Niddm1i4 | D1Smu2 ± 0.35 | G15 | 20.9*** | 5 × 10−6 | +2.2 ± 0.5 | 9.6 | 7 |
| G30 | 15.6** | 8 × 10−5 | +1.5 ± 0.4 | 7.2 |
Bw, body weight (grams); G15, postprandial glucose at 15 min, and, G30 at 30 min in mmol/liter.
SI for QTL support intervals estimated by the 1.5-LOD drop method; Mb, megabase pair.
LR denotes the likelihood ratio test statistic for QTL and level of significance: *suggestive experiment-wise significance (α = 0.2); **significant experiment-wise significance (α = 0.05); ***highly significant experiment-wise significance (α = 0.001).
Additive effect defined as AA-BB/2, where AA is the genotypic value for GK homozygotes at the QTL, and BB is the genotypic value for F344 homozygotes; SE, standard error.
Var is percentage of phenotypic residual variance explained by the QTL.
The number of positional candidate genes within the QTL interval using NCBI assembly 3.4 of the rat genome.