Table I.
List of all identified Triticeae CACTA transposons
| Name | Size | Organism | Comment | Reference |
|---|---|---|---|---|
| bp | ||||
| Caspar_107G22-1 | 1,305 | T. durum | Complete ends, SNAC | Wicker et al. (2003) |
| Caspar_107G22-2 | 5,096 | T. durum | Complete ends | Wicker et al. (2003) |
| Caspar_107G22-3 | 807 | T. durum | Fragment | Wicker et al. (2003) |
| Caspar_18B1-1ab | 9,913 | T. monococcum | Complete ends | Wicker et al. (2003) |
| Caspar_426K20-2 | 1,371 | T. monococcum | Complete ends, SNAC | Wicker et al. (2003) |
| Caspar_453N11-1ab | 12,664 | T. monococcum | Complete ends | Wicker et al. (2003) |
| Caspar_AF234649-2 | 750 | T. aestivum | Complete ends, SNAC | O.D. Anderson, C. Hsia, and V. Torres (unpublished data) |
| Caspar_AF325197-1 | 1,483 | T. aestivum | Fragment | Feuillet et al. (2001) |
| Caspar_AF325198-1 | 1,530 | T. aestivum | Complete ends, SNAC | Feuillet et al. (2001) |
| Caspar_AF427791-1b | 12,590 | Barley | Complete ends | Wei et al. (2002) |
| Caspar_AF446141-1 | 6,255 | Aegilops tauschii | Complete ends | Brooks et al. (2002) |
| Caspar_AF474072-1b | 10,540 | Barley | Complete ends | Rostoks et al. (2002) |
| Caspar_AF474373-1b | 12,446 | Barley | Complete ends | Rostoks et al. (2002) |
| Caspar_AF474373-2b | 7,376 | Barley | Complete ends | Rostoks et al. (2002) |
| Caspar_AF521177-1ab | 9,105 | Barley | Complete ends | Brunner el al. (2003) |
| Caspar_AL816166 | 284 | T. aestivum | Fragment (EST) | I. Wilson, R. Beswick, S. Shepherd, G. Barker, J. Parker, P. Owen, D. Edwards, J. Coghill, M. Holdsworth, J. Lenton et al. (unpublished data) |
| Caspar_AL816390 | 341 | T. aestivum | Fragment (EST) | I. Wilson, R. Beswick, S. Shepherd, G. Barker, J. Parker, P. Owen, D. Edwards, J. Coghill, M. Holdsworth, J. Lenton et al. (unpublished data) |
| Caspar_BF618436 | 143 | Barley | Fragment (EST) | R. Wing, T.J. Close, A. Kleinhofs, R. Wise, D. Begum, D. Frisch, Y. Yu, D. Henry, M. Palmer, T. Rambo et al. (unpublished data) |
| Caspar_TREP770b | 8,334 | A. tauschii | Complete ends | P. Langridge (unpublished data) |
| Caspar_TREP771 | 3,296 | A. tauschii | Fragment | P. Langridge (unpublished data) |
| Caspar_TREP788ab | 11,627 | Barley | Complete ends | N. Stein (unpublished data) |
| Caspar_X63357 | 569 | Barley | Fragment | Fernandez et al. (1993) |
| Caspar_Z66528-1 | 331 | Barley | Fragment | A. Molina, I. Diaz, F. Garcia-Olmedo (unpublished data) |
| Mandrake_107G22-1 | 930 | T. durum | Complete ends, SNAC | Wicker et al. (2003) |
| Mandrake_426K20-1 | 898 | T. monococcum | Complete ends, SNAC | Wicker et al. (2003) |
| Mandrake_AF234649-1 | 1,119 | T. aestivum | Complete ends, SNAC | O.D. Anderson, C. Hsia, and V. Torres (unpublished data) |
| Mandrake_AF446141-1 | 3,411 | A. tauschii | Complete ends | Brooks et al. (2002) |
| Mandrake_BG309793 | 736 | Barley | Fragment (EST) | R. Wing, T.J. Close, A. Kleinhofs, R. Wise, D. Begum, D. Frisch, Y. Yu, D. Henry, M. Palmer, T. Rambo et al. (unpublished data) |
| TAT-1_AF325196-1a | 7,190 | T. aestivum | Complete ends | Feuillet et al. (2001) |
| TAT-1_107G22-1 | 3,158 | T. durum | Fragment | Wicker et al. (2003) |
| TAT-1_AF427791−1 | 9,765 | Barley | Complete ends | Wei et al. (2002) |
| TAT-1_BJ247168 | 414 | T. aestivum | Fragment (EST) | Y. Ogihara, K. Murai (unpublished data) |
| TAT-1_BJ253225 | 514 | T. aestivum | Fragment (EST) | Y. Ogihara, K. Muirai (unpublished data) |
| Balduin_453N11-1a | 9,841 | T. monococcum | Complete ends | T. Wicker et al. (unpublished data) |
| Balduin_BJ218039 | 554 | T. aestivum | Fragment (EST) | Y. Ogihara, K. Murai (unpublished data) |
| Balduin_BQ469151 | 376 | Barley | Fragment (EST) | H. Zhang, W. Weschke, W. Michalek, N. Stein, A. Graner (unpublished data) |
| Balduin_BQ661452 | 376 | Barley | Fragment (EST) | W. Michalek, W. Weschke, K.-P. Pleissner, A. Graner (unpublished data) |
| Jorge_AF326781-1 | 16,497 | T. monococcum | Complete ends | Wicker et al. (2001) |
| Jorge_TREP766 | 14,733 | T. monococcum | Complete ends | J. Dubcovsky (unpublished data) |
| Enac_453N11-1 | 11,361 | T. monococcum | Complete ends | T. Wicker et al. (unpublished data) |
| Isaac_107G22-1a | 13,135 | T. durum | Complete ends | T. Wicker et al. (unpublished data) |
The elements are sorted according to their classification into families. The family name is given first. The source sequence (e.g. BAC clone address, GenBank no., or TREP accession no.) follows the name after an underscore. For elements from genomic sequences, a number for the individual copy of an element is indicated after a hyphen. SNAC, Small nonautonomous CACTA. The reference refers to the researcher who published the sequence in which the element was found.
a
Encodes a transposase.
b
Encodes a CTG-2 protein.