Table IV.
Differentially expressed genes in cold-treated pollen
| Tag_Sequence | Normal | Cold | Ratio | Unigene ID | Description |
|---|---|---|---|---|---|
| Cold-induced genes | |||||
| TAGAATGATG | 1 | 29 | 29.0a | At.42700 | Chromosome 3 CHR3v07142002 genomic sequence (cellulase-like protein) |
| GACAACAACA | 1 | 28 | 28.0a | At.16827 | FRIGIDA (FRI) mRNA, complete cds |
| GACAACAACA | 1 | 28 | 28.0a | At.35897 | Chromosome 1 CHR1v07142002 genomic sequence (MADS-box transcription factor, putative) |
| TGAAAACTGG | 2 | 55 | 27.5a | No match | |
| AGTTCATCTC | 1 | 26 | 26.0a | No match | |
| TACATACCAT | 1 | 22 | 22.0a | No match | |
| CCGGATGGAT | 1 | 19 | 19.0a | At.22234 | mRNA for exopolygalacturonase |
| AAAATTTGGT | 1 | 18 | 18.0a | No match | |
| TTTTCTCATT | 1 | 18 | 18.0a | At.24853 | mRNA for serine glyoxylate aminotransferase, complete cds |
| TTTGAGAATC | 1 | 16 | 16.0a | No match | |
| AGAAAAAGAC | 1 | 15 | 15.0a | No match | |
| ATTCCAAAAA | 2 | 29 | 14.5a | At.14365 | At2g42580/F14N22.15 mRNA, complete cds |
| AAAATAAAGA | 1 | 14 | 14.0a | No match | |
| AGTATAGAGG | 1 | 14 | 14.0a | No match | |
| AAAATTCAAA | 7 | 92 | 13.1a | At.29916 | Chromosome 5 CHR5v07142002 genomic sequence (peroxidase) |
| ATATTTAAAG | 2 | 23 | 11.5a | No match | |
| TTTAAGAGTC | 5 | 54 | 10.8a | No match | |
| AGGATGCTCA | 8 | 85 | 10.6a | At.19923 | Chromosome 5 CHR5v07142002 genomic sequence (putative protein) |
| TATCTCATTG | 2 | 20 | 10.0a | No match | |
| TAAAGATTAA | 1 | 10 | 10.0a | At.5375 | mRNA for JR3 protein |
| TAAAGATTAA | 1 | 10 | 10.0a | At.32958 | Chromosome 4 CHR4v07142002 genomic sequence (putative protein) |
| ACATCAATTA | 1 | 10 | 10.0a | No match | |
| TATCTGTTCA | 1 | 10 | 10.0a | No match | |
| TCTTAACATT | 1 | 10 | 10.0a | No match | |
| TATATATTCT | 1 | 10 | 10.0a | At.44082 | EST, Moderately similar to glyoxal oxidase (glx1), putative |
| ATAATAAAAT | 1 | 10 | 10.0a | At.20152 | Chromosome 5 CHR5v07142002 genomic sequence (pectin methyl-esterase-like protein) |
| ATAATAAAAT | 1 | 10 | 10.0a | At.32723 | Chromosome 5 CHR5v07142002 genomic sequence (pectin methyl-esterase-like protein) |
| AAATTAAAAT | 1 | 10 | 10.0a | At.6411 | AT3g25770/K13N2_9 mRNA, complete cds |
| TGTATTTAAC | 1 | 10 | 10.0a | No match | |
| TGTATTTAAC | 1 | 10 | 10.0a | No match | |
| Cold-repressed genes | |||||
| TCCCTATTAA | 208 | 1 | 208.0b | No match | |
| TCCCCGTACA | 149 | 1 | 149.0b | No match | |
| TTGGATTGGC | 60 | 3 | 20.0b | At.31475 | Chromosome 4 CHR4v07142002 genomic sequence (putative protein) |
| ACGTCGTAGT | 58 | 3 | 19.3b | No match | |
| GAGACGTTAT | 56 | 3 | 18.7b | No match | |
| AAGACAGGAG | 36 | 2 | 18.0b | At.21711 | Zinc finger protein 3 (ZFN3) mRNA, complete cds |
| GCTGCAAATA | 17 | 1 | 17.0b | At.37952 | Chromosome 2 CHR2v07142002 genomic sequence (putative thioredoxin) |
| GCCATTATGA | 33 | 2 | 16.5b | At.26579 | C7A10_870/C7A10_870 mRNA, complete cds |
| TGGATTATTG | 16 | 1 | 16.0b | At.2344 | Unknown protein (At4g27350) mRNA, complete cds |
| GGTCAGCTCA | 16 | 1 | 16.0b | At.20411 | AT5g01350/T10O8_60 mRNA, complete cds |
| GCAGGTTTGG | 62 | 4 | 15.5b | At.41998 | Chromosome 1 CHR1v07142002 genomic sequence (hypothetical protein) |
| GACCCTTACC | 31 | 2 | 15.5b | At.45700 | Chromosome 2 CHR2v07142002 genomic sequence (hypothetical protein) |
| GACAAGTTCG | 14 | 1 | 14.0b | At.27187 | Unknown protein (At3g52360) mRNA, complete cds |
| GCCCTCGCCG | 14 | 1 | 14.0b | At.23312 | Germin-like protein (GLP8) mRNA, complete cds |
| GTTCTCTTTT | 13 | 1 | 13.0b | At.7295 | Unknown protein (At5g43930; MRH10.2) mRNA, complete cds |
| GTTCTCTTTT | 13 | 1 | 13.0b | At.21104 | Unknown protein (At1g04140) mRNA, complete cds |
| TCCCTATAAG | 13 | 1 | 13.0b | No match | |
| GGAACATACG | 25 | 2 | 12.5b | At.36357 | Chromosome 1 CHR1v07142002 genomic sequence (protein kinase, putative) |
| TGGAGCAGCA | 12 | 1 | 12.0b | At.19998 | AT5g10270/F18D22_40 mRNA, complete cds |
| GGACGGGCTG | 12 | 1 | 12.0b | At.23506 | AT5g54810/MBG8_7 mRNA, complete cds |
| GGCTGATTGG | 11 | 1 | 11.0b | No match | |
| CAACGAGAAC | 11 | 1 | 11.0b | No match | |
| CGGTTTCTGA | 10 | 1 | 10.0b | At.37419 | Chromosome 2 CHR2v07142002 genomic sequence (putative histone H2B) |
| GATGGAGTTT | 10 | 1 | 10.0b | At.20144 | ESTs |
| GTGGCAAGAA | 10 | 1 | 10.0b | At.31838 | Chromosome 5 CHR5v07142002 genomic sequence (probable aldose 1-epimerase-like protein) |
| AACTAAGGGA | 10 | 1 | 10.0b | At.33661 | Chromosome 4 CHR4v07142002 genomic sequence (AIG1-like protein) |
| ACTCCAATCT | 10 | 1 | 10.0b | At.9578 | CBL-interacting protein kinase 10 (CIPK10) mRNA, complete cds |
| GCCCCTGCGC | 10 | 1 | 10.0b | No match |
a
Cold:Normal. b Normal:Cold.