Table II.
Predicted and confirmed GPI-anchored proteins in Arabidopsis
Confirmed GPI-anchored proteins are marked by superscript nos. (Table I). Bold indicates the presence of probable AG glycomodules. Entries in parentheses are candidates that have weak predictions for N- or C-terminal peptides. Families of homologous unknown/hypothetical proteins are separated by semicolons. Predictions have been submitted to MIPS.
| Protein Family | MIPS Protein Entry Codes | Total |
|---|---|---|
| Classical AGPs | At1g35230, At1g68725, At2g14890, At2g22470, At2g23130, At2g47930, At3g01700, At3g06360a, At4g09030, At4g16985, At4g37450, At4g40091, At5g10430, At5g14380, At5g18690, At5g64310, At5g65390 | 17 |
| AG peptides | At1g55330, (At2g46330), At3g01730, At3g13520, At3g20865, At3g57690, (At3g61640), At4g26320, At5g11740, At5g40730, At5g53250, At5g56540 | 12 |
| Extensin related | At1g02405, At1g23040, At1g70990, At3g06750, At4g16140, At5g11990, At5g49280 | 7 |
| Phytocyanins (28) | ||
| Stellacyanin like | At2g26720, At2g31050, At5g202301, At5g26330 | 4 |
| Uclacyanin like | At1g22480, At1g72230, At2g32300, At2g447902, At3g27200, At3g60270, At3g60280, At5g07475 | 8 |
| Early nodulin like | At1g08500, At1g48940, At1g79800, At2g23990, At2g250603, At3g01070, At3g18590, At3g20570, At4g275204, At4g28365, At4g30590, At4g31840, At4g32490, At5g15350a, At5g250905, At5g53870 | 16 |
| COBRA family (10) | ||
| COBRA | At1g09790, At3g02210, At3g29810, At5g15630, At5g60920 | 5 |
| COBRA like | At3g16860, At3g20580, (At4g161206), (At4g27110), At5g49270 | 5 |
| GPDL | At1g66970, At3g20520, At4g266907, At5g554808, At5g58050, At5g58170 | 6 |
| HIPL | At1g747909, At5g39970, At5g6263010 | 3 |
| Fasciclin-like AGPs (FLAs) | At1g03870, At2g0478011, At2g20520, At2g24450, At2g4547012, At3g12660, At3g46550, At3g6090013, At4g12730, At4g31370, At5g03170, At5g44130, At5g5573014, At5g60490 | 14 |
| Fasciclin like | At1g30800, At4g12950 | 2 |
| β-1,3 Glucanases | At1g1183015, (At1g18650), At1g26450, At1g32860a, At1g64760, At1g6625016, At1g69295, At1g77780, At2g0163017, At2g19440, At2g26600, At3g04010, At3g1356018a, At3g15800, (At3g24330), At3g58100, At4g29360, At4g3114019, At5g08000, (At5g18220), At5g20870, At5g42100, At5g42720, At5g56590, At5g5809020, At5g58480, At5g61130, At5g64790 | 28 |
| Polygalacturonase | At3g15720 | 1 |
| Pectate Lyases | At3g53190, At3g54920, At5g04310 | 3 |
| Proteases (16) | ||
| Aspartyl- | At1g05840, At1g08210, At1g65240, At2g17760, At3g02740, At3g51330, At3g51350, At4g35880, At5g10080, At5g36260 | 10 |
| Metallo- | At1g24140, At1g59970, At1g70170, (At2g45040), (At4g16640) | 5 |
| Cys- | At3g43960 | 1 |
| LTPL | At1g05450, At1g18280, At1g2795021a, At1g36150, (At1g55260), At1g62790, At1g73890, At2g13830, At2g27130, At2g44290, At2g44300, At2g48130, At2g48140, At3g22600, At3g22611, At3g43720, At3g58550, At4g08670, At4g12360, At4g14805, At4g14815, At4g22630, At4g22640, At5g09370, At5g13900, At5g64080 | 26 |
| SKU5 family | At4g1242022, At4g2524023, At5g51480 | 3 |
| Receptor like (16) | ||
| RLK3 like (DUF26) | At1g63550, At1g63580, At5g4128024, At5g4129025, At5g41300 | 5 |
| PRK5 like | At1g20030, At4g36010,At4g38660 | 3 |
| Lectin like | At1g07460 | 1 |
| LysM domains | At1g2188026, At1g77630, At2g1712027 | 3 |
| Other | At1g10375 | 1 |
| Cf-2/Cf-5 like | At1g80080, At2g42800, At4g28560 | 3 |
| GPI-Anchored peptides (GAPEPs) | At3g01940, (At3g01950), At5g14110, (At5g40960), At5g40970a, At5g40980, (At5g50660), At5g63500 | 8 |
| Other | At5g07190, At5g62200, At5g62210; At3g0739028; At1g24520, At4g15460 | 6 |
| Unknown/hypothetical | At1g54860, At3g06035, At5g1923029, At5g1925030; At1g07135, At1g09175, At3g04640, At3g55790; At1g29980, At2g34510, At5g14150; At2g20700, At4g28280, At5g56170; At3g18050, At4g28100; At3g27410, At5g40620, (At1g23050), At1g70985; At5g26290a, At5g26300a; At3g24518, At5g35890; At1g21090; At1g56320; At1g61900; At1g64640; At2g28410; (At2g29660); At3g26110; At3g44100a; At3g58890; At3g61980; At4g14746; At4g28085; At4g38140; At5g08210; At5g14190; At5g16670; At5g22430; At5g67131 | 42 |
| Total | 248 |
a
Sequences found in the extended genomic analysis.