Table III.
Candidate genes likely to be up-regulated in seeds as compared with at least one other organ
Only genes showing probabilities of higher expression in seeds above 0.95 (bold values) are listed here.
| Cellular Functions (See Table I) | Putative Cellular Activity | Protein | Probabilities (Seed vs. Other Organ)
|
|||||
|---|---|---|---|---|---|---|---|---|
| Leaf | Root | Flower | Silique | Seedling | Mixed | |||
| FAS | Plastidial pyruvate dehydrogenase E1 alpha subunit | At1g01090 | 0.98 | 0.999 | 0.998 | 0.97 | 0.999 | 0.999 |
| Plastidial pyruvate dehydrogenase E1 beta subunit | At1g30120 | 0.5 | 0.99 | 0.1 | 0.7 | 0.97 | 0.996 | |
| Plastidial dihydrolipoamide acetyltransferase, PDH complex | At3g25860 | 0 | 0.6 | 0.1 | 0.4 | 0.4 | 0.97 | |
| Plastidial dihydrolipoamide dehydrogenase, PDH complex | At3g16950 | 0.5 | 0.8 | 0.8 | 0.2 | 0.8 | 0.97 | |
| ACCase, biotin carboxyl carrier protein | At5g15530a | 0.7 | 0.6 | 0.95 | 0.9 | 0.93 | 0.94 | |
| KAS I | At5g46290 | 0.94 | 0.8 | 0.98 | 0.96 | 0.994 | 0.997 | |
| KAS III | At1g62640b | 0.1 | 0.92 | 0.6 | 0.8 | 0.5 | 0.98 | |
| Plastidial ketoacyl-ACP reductase | At1g24360a | 0.7 | 0.91 | 0.8 | 0.2 | 0.93 | 0.98 | |
| Plastidial ketoacyl-ACP reductase | At1g24360b | 0.4 | 0.92 | 0.6 | 0.8 | 0.5 | 0.98 | |
| Stearoyl-ACP desaturase | At2g43710 | 0.9 | 0.995 | 0.95 | 0.95 | 0.92 | 0.996 | |
| Stearoyl-ACP desaturase | At3g02630 | 0.7 | 0.998 | 0.95 | 0.96 | 0.93 | 0.999 | |
| Plastidial ACP | At3g05020 | 0.1 | 0.5 | 0.6 | 0.8 | 0 | 0.98 | |
| P | Plastidial dihydroxyacetone-phosphate reductase | At5g40610 | 0.6 | 0.98 | 0.7 | 0.98 | 0.8 | 0.993 |
| Digalactosyldiacylglycerol synthase | At3g11670 | 0.1 | 0.92 | 0.6 | 0.8 | 0.5 | 0.98 | |
| ER | ER dihydroxyacetone-phosphate reductase | At2g41540a | 0.4 | 0.97 | 0.3 | 0.91 | 0.7 | 0.996 |
| ER dihydroxyacetone-phosphate reductase | At2g41540b | 0.4 | 0.97 | 0.7 | 0.91 | 0.7 | 0.996 | |
| ER oleate desaturase | At3g12120 | 0.96 | 0.5 | 0.7 | 0.99 | 0.996 | 0.993 | |
| ER linoleate desaturase | At2g29980 | 0.9 | 0.995 | 0.95 | 0.6 | 0.8 | 0.996 | |
| ER CDP-diacylglycerol synthase | At1g62430 | 0.5 | 0.99 | 0.8 | 0.8 | 0.8 | 0.97 | |
| Mito | α-Ketoacid decarboxylase E1a subunit, BCKDH Complex | At5g09300 | 0 | 0.99 | 0.8 | 0.8 | 0.8 | 0.999 |
| Dihydrolipoamide transacylase, BCKDH complex | At3g06850 | 0.6 | 0.95 | 0.4 | 0.4 | 0.8 | 0.8 | |
| Mitochondrial GPAT | At1g06520 | 0.1 | 0.5 | 0.6 | 0.8 | 0.5 | 0.98 | |
| Mitochondrial lipoate synthase | At2g20860 | 0 | 0.99 | 0.8 | 0.2 | 0.8 | 0.7 | |
| Oil Synth. and Stor. | Acyl-CoA: DAGAT | At2g19450 | 0.4 | 0.97 | 0.7 | 0.91 | 0.7 | 0.996 |
| Oil body oleosin | At3g01570 | 0.97 | 0.999 | 0.999 | 0.999 | 0.998 | 0.999 | |
| Oil body oleosin | At3g18570 | 0.1 | 0.92 | 0.6 | 0.8 | 0.5 | 0.98 | |
| Oil body oleosin | At3g27660 | 0.999 | 0.999 | 0.999 | 0.999 | 0.999 | 0.999 | |
| Oil body oleosin | At4g25140 | 0.9 | 0.999 | 0.99 | 0.9 | 0.98 | 0.999 | |
| Oil body oleosin | At5g40420 | 0.999 | 0.999 | 0.999 | 0.999 | 0.999 | 0.999 | |
| Caleosin | At1g70670 | 0.4 | 0.5 | 0.6 | 0.1 | 0.5 | 0.98 | |
| Caleosin | At4g26740 | 0.997 | 0.999 | 0.999 | 0.999 | 0.999 | 0.999 | |
| Caleosin | At5g55240 | 0.7 | 0.998 | 0.95 | 0.991 | 0.93 | 0.999 | |
| Degradation | Fatty acid alcohol oxidase | At4g19380 | 0.1 | 0.92 | 0.6 | 0.8 | 0.5 | 0.98 |
| Monoacylglycerol lipase | At2g39400 | 0.1 | 0.92 | 0.6 | 0.1 | 0.4 | 0.98 | |
| Acyl-CoA oxidase | At2g35690 | 0.1 | 0.92 | 0.6 | 0.8 | 0.5 | 0.98 | |
| Ketoacyl-CoA thiolase | At1g04710 | 0.4 | 0.97 | 0.7 | 0.91 | 0.7 | 0.98 | |
| Ketoacyl-CoA thiolase | At2g33150 | 0.4 | 0.999 | 0.995 | 0.7 | 0.8 | 0.998 | |
| Dienoyl-CoA reductase | At3g12790 | 0.4 | 0.92 | 0.6 | 0.5 | 0.5 | 0.98 | |
| Lipid signaling | Secretory phospholipase A2 | At4g29070 | 0.1 | 0.92 | 0.6 | 0.8 | 0.5 | 0.98 |
| DAD1-like acylhydrolase | At4g16820 | 0.5 | 0.5 | 0.5 | 0.96 | 0.8 | 0.8 | |
| Lipoxygenase | At1g17420 | 0.4 | 0.9 | 0.7 | 0.91 | 0.1 | 0.3 | |
| Lipoxygenase | At3g22400a | 0.6 | 0.996 | 0.92 | 0.98 | 0.8 | 0.999 | |
| Lipoxygenase | At3g22400b | 0.94 | 0.999 | 0.996 | 0.999 | 0.994 | 0.999 | |
| α-Dioxygenase-peroxidase (involved in FA α-oxidation) | At1g73680 | 0.92 | 0.999 | 0.994 | 0.997 | 0.99 | 0.999 | |
| Type II phosphoinositide 5-phosphatase | At1g65580b | 0.4 | 0.97 | 0.7 | 0.91 | 0.7 | 0.93 | |
| Patatin-like acyl-hydrolase | At4g37050 | 0.4 | 0.97 | 0.7 | 0.4 | 0.7 | 0.996 | |
| Nonspecific phospholipase C | At3g03530 | 0.1 | 0.92 | 0.6 | 0.8 | 0.5 | 0.98 | |
| Phospholipase A2-activating protein | At3g18860 | 0.1 | 0.5 | 0.6 | 0.1 | 0 | 0.98 | |
| Wax/cutin | KCS | At1g68530 | 0.4 | 0.999 | 0.8 | 0.2 | 0.3 | 0.9 |
| KCS | At2g26250 | 0.97 | 0.999 | 0.98 | 0.2 | 0.8 | 0.999 | |
| KCS | At2g26640 | 0.4 | 0.9 | 0.7 | 0.91 | 0.7 | 0.98 | |
| KCS | At4g34250 | 0.6 | 0.996 | 0.92 | 0.98 | 0.3 | 0.999 | |
| KCS | At4g34520 | 0.993 | 0.999 | 0.999 | 0.999 | 0.999 | 0.999 | |
| Fatty acid omega-hydroxylase | At4g00360 | 0.5 | 0.99 | 0.5 | 0.2 | 0.1 | 0.3 | |
| Ketoacyl-CoA reductase | At1g67730a | 0.2 | 0.995 | 0.99 | 0.995 | 0.98 | 0.999 | |
| Acyl-CoA reductase (NADPH dependent) | At3g44540 | 0.1 | 0.7 | 0.6 | 0.8 | 0.5 | 0.98 | |
| Putative transcription factor CER2 | At4g13840 | 0.6 | 0.996 | 0.92 | 0.6 | 0.8 | 0.993 | |
| Miscellaneous | Long-chain acyl-CoA synthetase (not plastidial, not peroxisomal) | At2g47240 | 0.9 | 0.998 | 0.8 | 0.4 | 0.98 | 0.999 |
| Epoxide hydrolase | At4g02340 | 0.8 | 0.996 | 0.92 | 0.92 | 0.97 | 0.999 | |
| Protein N-myristoyltransferase | At5g57020 | 0.5 | 0.96 | 0.8 | 0 | 0.8 | 0.97 | |
| LTP1 | At2g38530 | 0.8 | 0.999 | 0.1 | 0.997 | 0.993 | 0.98 | |
| LTP5 | At3g43720 | 0.2 | 0.97 | 0.3 | 0.1 | 0.1 | 0.5 | |
| Acyl-CoA desaturase like | At2g31360 | 0.7 | 0.6 | 0.95 | 0.8 | 0.7 | 0.92 | |
| ATP citrate lyase | At1g10670 | 0.97 | 0.999 | 0.98 | 0.1 | 0.96 | 0.999 | |