Table 2.
Results of BLAST Searches of the indica (cv 93-11) Genomic Database
| Hit (Contig) | Length | Identity (%)a |
Positionb | Target Site Duplication | Similar japonica Copy |
Identity (%)c |
|
|---|---|---|---|---|---|---|---|
| 1,041 | 5063 [A]12 | 99 | 6,488 | + | None | ||
| 144 | 2536 [A]13 | 81 | 13,682 | + | None | AP004309 | 99.6 |
| 23,198 | 4121 | 62 | 3,959 | − | None | ||
| 15,747 | 2336 | 68 | 2,560 | − | None | ||
| 5,471 | 2825 [A]9 | 67 | 10,621 | − | None | BX000506 | 98.8 |
| 98,735 | 52 [A]6 | 94 | 342 | − | TTTATATGGGTTCT/TTTATATGGGTTCT | AP005288 | 100 |
| 19,342 | 264 [A]7 | 70 | 4,506 | + | None | AC120539 | 99.6 |
| 9,831 | 123 [A]11 | 76 | 5,668 | − | CAAAT/CAAAT | AL607005 | 99.0 |
a
Percentage of identity to the full-length Karma copy isolated from japonica.
b
Position of the first nucleotide and direction within the contig; +, upper strand; −, lower strand.
c
Percentage of identity between the indica and japonica elements.