Table 11.
Potential Binding Sites
| Genes | UASH | URS1H | Hamming Distance | ||
| Site | Pos | Site | Pos | ||
| MES1 | GATTTTGAAGTAGGA | -438 | TTAGCCGCCGA | -246 | 5:MER1 |
| YJL045W | TTTTGTGAAGAGATA | -407 | TTAGCCGCTCA | -273 | 4:DMC1 |
| HSP60 | GTTTTTGTAGGTATA | -329 | ATAGCCGCCCA | -252 | 5:MER1 |
| SPO1 | ATTTTTGAAGTTAAC | -192 | TCAGCGGCTAT | -90 | 5:RED1 |
| MEK1 | TCATTTGTAGTTTAT | -233 | TCGGCGGCTAT | -136 | 3:MEK1 |
| YIG1 | ATTTCCGGAGTTTTC | -183 | TCGGCGGCTAT | -140 | 5:RED1 |
| †AGP1 | CCTTTTGATGACTTT | -786 | TCGGCGGCTAA | -699 | 5:SPO16 |
| †AGPl | CCTTTTGATGACTTT | -786 | TCGGCGGCTAA | -668 | 5:SPO16 |
| †REC114 | CATTTTGGTGGGTTC | -158 | TGGGCGGCTAA | -94 | 5:SPO16 |
| †GNTl | TCATTTGGAGAATAT | -340 | ATAGCCGCCAT | -299 | 5:SPO13 |
| ‡MEK1 | TTATATGCAGTATAT | -276 | ATGGCGGCTAA | -150 | 4:MEK1 |
| ‡MMS1 | AACTCTGTAGTTATA | -643 | TGGGCGGCTAA | -497 | 5:REC114 |
For each occurrence we give the gene names corresponding to the upstream region, the sites and positions for UASH and URS1H, and also the hamming distance and the closest known gene with the cooperative binding sites. For example, 5:SPO16 in the first row means that the hamming distance between AGP1 and SPO16 was 5. †: found only by IUPAC pattern search, ‡: found only by profile search.