Table 1.
Genes differentially expressed between large and small colony mutants (p < 0.01; fold change > 1.5).
| Locus ID | Gene Name | P Value | Fold Change | Description |
| 109815 | H47 | 0.0000 | -1.55 | histocompatibility 47 |
| 93707 | Pcdhgc4 | 0.0000 | -1.93 | protocadherin gamma subfamily C, 4 |
| 100121 | 5730495N10Rik | 0.0001 | 11.68 | tudor domain containing 7 |
| 23936 | Lynx1 | 0.0001 | -1.51 | Ly6/neurotoxin 1 |
| 74558 | 9130002C22Rik | 0.0001 | -2.18 | GTPase, very large interferon inducible 1 |
| 77705 | 9230104L09Rik | 0.0002 | -2.10 | RIKEN cDNA 9230104L09 gene |
| 18028 | Nfib | 0.0002 | -2.19 | nuclear factor I/B |
| 14081 | Acsl1 | 0.0003 | 1.55 | acyl-CoA synthetase long-chain family member 1 |
| 12669 | Chrm1 | 0.0003 | -1.53 | cholinergic receptor, muscarinic 1, CNS |
| 14824* | Grn | 0.0003 | -4.26 | granulin |
| 60599 | Trp53inp1 | 0.0004 | -1.54 | transformation related protein 53 inducible nuclear protein 1 |
| 268490* | 1110032E16Rik | 0.0006 | -1.53 | RIKEN cDNA 2600001B17 gene |
| 68473 | 1110003E08Rik | 0.0006 | -1.63 | MOB1, Mps One Binder kinase activator-like 1A (yeast) |
| 16391 | Isgf3g | 0.0006 | -1.93 | interferon dependent positive acting transcription factor 3 gamma |
| 14182 | Fgfr1 | 0.0008 | -1.53 | fibroblast growth factor receptor 1 |
| 71723 | Dhx34 | 0.0010 | 1.73 | DEAH (Asp-Glu-Ala-His) box polypeptide 34 |
| 494468 | MGC38735 | 0.0010 | -1.51 | hypothetical protein |
| 20742* | Spnb2 | 0.0011 | -1.50 | spectrin beta 2 |
| 19374 | Rag2 | 0.0012 | 2.21 | recombination activating gene 2 |
| 18103* | Nme2 | 0.0012 | -1.50 | expressed in non-metastatic cells 2, protein |
| 66359 | 2310005N03Rik | 0.0014 | 1.56 | RIKEN cDNA 2310005N03 gene |
| 194367 | 0.0015 | -3.69 | Not found | |
| 72700 | 2810040O04Rik | 0.0017 | -1.73 | Zinc fingerprotein 618 |
| 231293 | C130090K23Rik | 0.0019 | -2.14 | RIKEN cDNA C130090K23 gene |
| 27660 | 1700088E04Rik | 0.0021 | -1.66 | RIKEN cDNA 1700088E04 gene |
| 55932 | Gbp3 | 0.0022 | -1.91 | guanylate nucleotide binding protein 4 |
| 19245 | Ptp4a3 | 0.0024 | 1.77 | protein tyrosine phosphatase 4a3 |
| 17722 | Nd6 | 0.0024 | -1.53 | NADH dehydrogenase subunit 6 |
| 12578 | Cdkn2a | 0.0024 | -2.02 | cyclin-dependent kinase inhibitor 2A |
| 20846 | Stat1 | 0.0026 | -1.52 | signal transducer and activator of transcription 1 |
| 77015 | 2700082O15Rik | 0.0026 | -1.61 | metallophosphoesterase domain containing 2 |
| 50877 | Neu3 | 0.0026 | -1.65 | neuraminidase 3 |
| 67998* | 1300010M03Rik | 0.0026 | -1.88 | RIKEN cDNA 1300010M03 gene |
| 171463 | Il17rd | 0.0026 | -2.72 | interleukin 17 receptor D |
| 20363 | Sepp1 | 0.0026 | -3.05 | selenoprotein P, plasma, 1 |
| 12833 | Col6a1 | 0.0026 | -6.94 | procollagen, type VI, alpha 1 |
| 13612 | Edil3 | 0.0028 | -1.54 | EGF-like repeats and discoidin I-like domains 3 |
| 77773 | A330103N21Rik | 0.0028 | -1.77 | RIKEN cDNA A330103N21 gene |
| 228543 | Arhv | 0.0032 | -2.04 | ras homolog gene family, member V |
| 230899 | Nppa | 0.0033 | -1.52 | natriuretic peptide precursor type A |
| 3337208 | Cytb | 0.0033 | -1.65 | cytochrome b |
| 12558 | Cdh2 | 0.0037 | -1.57 | cadherin 2 |
| 192231* | Clp1 | 0.0037 | -1.67 | hexamethylene bis-acetamide inducible 1 |
| 93875 | Pcdhb4 | 0.0041 | -1.58 | protocadherin beta 4 |
| 72080 | 2010317E24Rik | 0.0044 | 1.51 | RIKEN cDNA 2010317E24 gene |
| 27360 | Add3 | 0.0045 | -1.57 | adducin 3 (gamma) |
| 14431 | Gamt | 0.0046 | -1.65 | guanidinoacetate methyltransferase |
| 13841 | Epha7 | 0.0047 | -1.55 | Eph receptor A7 |
| 21356 | Tapbp | 0.0047 | -1.63 | TAP binding protein |
| 26388 | Ifi202b | 0.0047 | -4.15 | interferon activated gene 202B |
| 77974 | Rdh12 | 0.0050 | -1.60 | retinol dehydrogenase 12 |
| 11542 | Adora3 | 0.0050 | -1.76 | adenosine A3 receptor |
| 16909 | Lmo2 | 0.0050 | -1.84 | LIM domain only 2 |
| 16779 | Lamb2 | 0.0051 | 2.50 | laminin, beta 2 |
| 19264 | Ptprc | 0.0051 | 1.78 | protein tyrosine phosphatase, receptor type, C |
| 57754 | 1500001H12Rik | 0.0051 | -1.50 | RIKEN cDNA 1500001H12 gene |
| 225849 | Ppp2r5b | 0.0051 | -1.88 | protein phosphatase 2, regulatory subunit B (B56), beta isoform |
| 15950 | Ifi203 | 0.0052 | -1.65 | interferon activated gene 203 |
| 258568 | MOR202-20 | 0.0053 | 1.68 | olfactory receptor 1457 |
| 23871 | Ets1 | 0.0058 | 1.54 | E26 avian leukemia oncogene 1, 5' domain |
| 21813 | Tgfbr2 | 0.0058 | -1.50 | transforming growth factor, beta receptor II |
| 65116 | Prrg2 | 0.0060 | -1.52 | proline-rich Gla (G-carboxyglutamic acid) polypeptide 2 |
| 192231 | Clp1 | 0.0060 | -1.88 | hexamethylene bis-acetamide inducible 1 |
| 20641 | Snrpd1 | 0.0062 | 1.54 | small nuclear ribonucleoprotein D1 |
| 252868* | Oppo1 | 0.0062 | -1.52 | outer dense fiber of sperm tails 4 |
| 380832 | Tcrg-C | 0.0066 | 2.17 | T-cell receptor gamma, constant region |
| 24086* | Tlk2 | 0.0067 | -1.61 | tousled-like kinase 2 (Arabidopsis) |
| 67775 | 5830458K16Rik | 0.0068 | -1.64 | RIKEN cDNA 5830458K16 gene |
| 15042 | H2-T24 | 0.0069 | -1.68 | histocompatibility 2, T region locus 24 |
| 24066 | Spry4 | 0.0071 | -1.51 | sprouty homolog 4 (Drosophila) |
| 15425 | Hoxc6 | 0.0071 | -1.65 | homeo box C6 |
| 14934 | Gypa | 0.0074 | 2.57 | glycophorin A |
| 230587 | Gli6 | 0.0074 | -1.55 | GLIS family zinc finger 1 |
| 19242 | Ptn | 0.0074 | -1.77 | pleiotrophin |
| 211770 | A530090O15Rik | 0.0077 | -1.51 | tribbles homolog 1 (Drosophila) |
| 20128 | Trim30 | 0.0077 | -1.70 | tripartite motif protein 30 |
| 22441 | Xlr | 0.0079 | -1.73 | X-linked lymphocyte-regulated complex |
| 66205 | 1110055L24Rik | 0.0079 | -1.96 | CD302 antigen |
| 70110* | 2010008K16Rik | 0.0081 | -1.58 | interferon-induced protein 35 |
| 214855 | D430024K22Rik | 0.0084 | -1.62 | AT rich interactive domain 5A (Mrf1 like) |
| 13003 | Cspg2 | 0.0086 | -1.70 | chondroitin sulfate proteoglycan 2 |
| 70355* | Gprc5c | 0.0087 | -1.82 | G protein-coupled receptor, family C, group 5, member C |
| 67974 | 5730405I09Rik | 0.0089 | 1.58 | RIKEN cDNA 5730405I09 gene |
| 20347 | Sema3b | 0.0091 | -1.53 | sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B |
| 16364 | Irf4 | 0.0092 | -1.60 | interferon regulatory factor 4 |
| 18595 | Pdgfra | 0.0095 | -2.77 | platelet derived growth factor receptor, alpha polypeptide |
| 14465 | Gata6 | 0.0097 | -1.53 | GATA binding protein 6 |
Note: Three unknown genes are not included. * indicates the gene is located on chromosome 11.