Table 1.
Custom tools* currently in the main divisions of EGenBio
| Division | Tool Name | Tool Description |
| Genomics | SearchSequence | Search the mtDNA genome database for DNA or protein sequences |
| Genomics | SearchAlignment | Search the mtDNA genome database for sequence alignments |
| Genomics | SearchHuSequence | Search the human mtDNA database for DNA or protein sequences |
| Genomics | SearchHuAlignment | Search the human mtDNA database for sequence alignments |
| Evolution | TranslateTree | Translate labels of a tree file |
| Evolution | FilterViz | Visualize filters associated with alignments |
| Evolution | TreeReader | Extract tree clusters along with information on branch lengths |
| Evolution | SaturationTool | Visualize results from saturation mutagenesis MCMC analysis |
| Evolution | LnLCorr | Detect coevolution among residues using LRTs and trees |
| Biodiversity | SpeciesList | List species currently in EGenBio |
| Biodiversity | SpeciesSearch | Search species by taxonomic group or NCBI genome identifier |
| Biodiversity | LocusOrder | Display mitochondrial gene order for specified taxa |
| Biodiversity | DatabaseSummary | Provide information about the EGenBio databases |
| Biodiversity | PrimerPermuter | Generate permutations for use in primer design |
| Biodiversity | PrimerAlternatives | Produce degenerate primers that reflect amino acid variation |
*All tools listed are original to EGenBio, except that alignments are based on ClustalW [11].