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. 2006 Nov 27;1:23. doi: 10.1186/1748-7188-1-23

Table 5.

Results on real datasets. Results of Exit-point method on biological samples. The real motifs were obtained in all the six cases using the Exit-point framework.

Sequence Sample Size t Best (20,2) Motif Reference Motif
E. coli CRP 1890 18 TGTGAAATAGATCACATTTT TGTGANNNNGNTCACA
preproinsulin 7689 4 GGAAATTGCAGCCTCAGCCC CCTCAGCCC
DHFR 800 4 CTGCAATTTCGCGCCAAACT ATTTCNNGCCA
metallothionein 6823 4 CCCTCTGCGCCCGGACCGGT TGCRCYCGG
c-fos 3695 5 CCATATTAGGACATCTGCGT CCATATTAGAGACTCT
yeast ECB 5000 5 GTATTTCCCGTTTAGGAAAA TTTCCCNNTNAGGAAA