Table 5.

Replicated design, dual channel with dye swap. Data objects have been omitted for brevity.

Source ID	Sample ID	Extract ID	LabeledExtract ID	Label	Hybridization ID
Source 1a	Sample 1a	Extract 1a	LabeledExtract 1a Cy3	Cy3	Hybridization 1
Source 1b	Sample 1b	Extract 1b	LabeledExtract 1b Cy5	Cy5	Hybridization 1
Source 1a	Sample 1a	Extract 1a	LabeledExtract 1a Cy5	Cy5	Hybridization 2
Source 1b	Sample 1b	Extract 1b	LabeledExtract 1b Cy3	Cy3	Hybridization 2
Source 2a	Sample 2a	Extract 2a	LabeledExtract 2a Cy3	Cy3	Hybridization 3
Source 2b	Sample 2b	Extract 2b	LabeledExtract 2b Cy5	Cy5	Hybridization 3
Source 2a	Sample 2a	Extract 2a	LabeledExtract 2a Cy5	Cy5	Hybridization 4
Source 2b	Sample 2b	Extract 2b	LabeledExtract 2b Cy3	Cy3	Hybridization 4