Table 1.
Crystallographic data
MAD data | High-resolution data | |||
---|---|---|---|---|
Space group | P41 | |||
Contents of asymmetric unit | 2 duplexes of d(CCTAGG) + 2 Ni-TMPy | |||
Unit cell dimensions | a = 32.320 Å c = 62.157 Å | a = 32.210 Å c = 62.259 Å | ||
Maximum resolution, Å | 1.59 | 1.59 | 1.19 | 0.86 |
Wavelength, Å | 0.9198 | 0.9189 | 0.7747 | 0.9057 |
No. of unique reflns* | 30,852 | 8,562 | 74,396 | 45,197 |
|F(hkI)|>4σ | ||||
Total no. of reflns | 46,441 | 44,830 | 120,055 | 336,951 |
†Rmerge | 1.7% | 1.7% | 1.4% | 2.1% |
‡Ranom | 7.0% | 3.2% | 4.2% | 4.4% |
Phasing statistics | (treated as native) | |||
Phasing power, acentric/centric | 4.49/5.45 | 2.88/2.49 | ||
RCullis, acentric/centric | 0.29/0.19 | 0.40/0.36 | ||
Mean figure of merit, acentric/centric | 0.87/0.85 | |||
Refinement statistics | ||||
Refinement range, Å | 6.0–0.90 | |||
R factor all reflns | 15.2% | |||
No. of reflns | 45,197 | |||
R factor for reflns >4σ(F) | 14.2% | |||
No. of reflns | 37,075 | |||
% completeness, R factor for highest-resolution shell | 70.3%, 17.4% | |||
Free R factor | 16.1% | |||
Total no. of least-squares parameters | 3,867 | |||
Total no. of atoms | 2,360 | |||
Number of water molecules | 198 | |||
Number of magnesium ions | 2 |
reflns, reflections.
*Friedel pairs were kept separate for the MAD data and were merged for the high-resolution data used for the refinement.
Rmerge is defined as Σ|I − <I>|/ΣI with Bijvoet pairs being treated separately.
Ranom is defined as Rmerge with only Bijvoet pairs now being merged in the calculation.