Table 1. Server classes and descriptions.
Server class | Server description |
---|---|
Administration | List residue |
List sequence | |
List coordinates | |
Renumber a file | |
Structure validation | Check packing quality |
Check Ramachandran plot | |
Check crystal packing clashes | |
Check bond angles (or distances, planarities, etc.) | |
Protein analysis | Accessibility, secondary structure and crystal contacts |
Protein ligand contacts | |
2D graphics | B-factor plot |
Ramachandran plot | |
3D graphics | Molecule coloured by B-factor |
Transparent arrow-and-cylinder drawing | |
A simple alpha carbon trace | |
Cysteine related | List cysteine bridges |
List torsion angles of cysteine bridges | |
Water related | List waters near residues |
List residues near waters | |
Move waters to the correct symmetry position | |
Add crystallographically related waters missing in PDB file |
About 100 servers are divided into 20 classes, approximately.
The left column lists some of these classes, while the right column lists a few servers of each of those classes.