TABLE 1.
Sequence comparison between Cyclospora species and Eimeria species along selected regions of the SSU-rRNA gene
| Organism | GenBank accession no. | Locus sequencea (bp position)
|
||
|---|---|---|---|---|
| Nonhuman primate-derived Cyclospora spp. | C. cayetanensis | Eimeria spp. | ||
| Cyclospora spp. | ||||
| C. cayetanensis | AF111183 | CGGCCT T GCCCGT (653-665) | CGCTTC G CTGCGT (713-725) | AGGACC G AGGTAA (845-857) |
| C. cercopitheci | AF111184 | CGGCCG C GCCCGT (655-667) | CGCTTC A GTGCGT (715-727) | AGGACC G AGGTAA (848-860) |
| C. colobi | AF111186 | CGGCCG C GCCCGT (653-665) | CGCTTC A CTGCGT (713-725) | AGGACC G AGGTAA (845-857) |
| C. papionis | AF111187 | CGGCCG C GCCCGT (653-665) | CGCTTC A CTGCGT (713-725) | AGGACC G AGGTAA (845-857) |
| Baboon 22 | AF061566 | CGGCCG C GCCCGT (634-648) | CGCTTC A CTGCGT (694-706) | AGGACC G AGGTAA (827-839) |
| Baboon 34 | AF061567 | CGGCCG C GCCCGT (634-648) | CGCTTC A CTGCGT (694-706) | AGGACC G AGGTAA (827-839) |
| Baboon 40 | AF061568 | CGGCCG C GCCCGT (632-644) | CGCTTC A CTGCGT (692-704) | AGGACC G AGGTAA (825-837) |
| Eimeria spp. | ||||
| E. acervulina | U67115 | CTGCGC T GCCCGT (637-649) | CGCTTA A TTGCGT (698-710) | AGGACC A AGGTAA (831-843) |
| E. bovis | U77084 | CGGTAC C GCCCGT (633-645) | CGCTTA A TTGCTG (693-705) | AGGACC A AGGTAA (831-843) |
| E. brunetti | U67116 | CTGCGC T GCCCGT (635-647) | CTCTTA A TTGCGT (696-708) | AGGACC A AGGTAA (829-841) |
| E. maxima | U67117 | TTGCGC T GCCCGT (639-651) | GCGTTA A TTGCGT (699-711) | AGGACC A AGGTAA (833-845) |
| E. mitis | U40262 | CTGTGC T GCCCGT (636-648) | CGCTTC A CTGCGT (695-707) | AGGACC A AGGTAA (827-839) |
| E. mivati | U76748 | CTGCGC T GCCCGT (637-649) | CGCTTC A TTGCGT (698-710) | AGGACC A AGGTAA (831-843) |
| E. necatrix | U67119 | CGGCGC C GCCCGT (641-653) | CGCTTA A TTGCGT (702-714) | AGGACC A AGGTAA (835-847) |
| E. nieschulzi | U40263 | CGGTTC C GCCCGT (654-666) | CGCTTC A TTGCGT (715-727) | GGGACT A AGGTAA (848-860) |
| E. praecox | U67120 | CTGCGC T GCCCGT (636-648) | CGCTTT A TTGCGT (697-709) | AGGACC A AGGTAA (830-842) |
| E. tenella | U40264 | CGGCGT C GCCCGT (641-653) | CGCTTA A TTGCTG (702-714) | AGGACC A AGGTAA (835-847) |
a
A 3′-SNP used in primer design is indicated in boldface.