TABLE 3.
Performance of final pairwise classifiers on a training and validation set of NMR spectra from cell suspensions of Candida spp.a
Pairwise classifiers | Chemical shift range (ppm) | Training data set
|
Validation data set
|
Indeterminate sample | No. (%) of isolates with indeterminate classification for:
|
|||||
---|---|---|---|---|---|---|---|---|---|---|
No. of isolates | Sensitivity (%) | Specificity (%) | No. of isolates | Sensitivity (%) | Specificity (%) | Training data set | Validation data set | |||
C.alb vs C.glab | 2.18-2.25; 3.72-3.79 | 102:93 | 100 | 100 | 33:26 | 100 | 100 | C.alb | 3 (3) | 0 (0) |
C.alb vs C.krus | 1.62-1.77; 3.70-3.73 | 102:79 | 100 | 100 | 33:21 | 100 | 100 | C.glab | 4 (4) | 0 (0) |
C.alb vs C.para | 1.52-1.58; 2.17-2.24 | 102:95 | 100 | 100 | 33:27 | 97 | 100 | C.krus | 3 (3) | 1 (5) |
C.alb vs C.trop | 1.48-1.58; 2.97-3.14 | 102:73 | 100 | 99 | 33:23 | 100 | 100 | C.para | 3 (3) | 0 (0) |
C.glab vs C.krus | 1.74-1.76; 2.30-2.37 | 93:79 | 100 | 98 | 26:21 | 100 | 100 | C.trop | 0 (0) | 1 (4) |
C.glab vs C.para | 2.30-2.37; 3.67-3.77 | 93:95 | 100 | 100 | 26:27 | 100 | 100 | |||
C.glab vs C.trop | 3.24-3.30; 3.74-3.79 | 93:73 | 100 | 100 | 26:23 | 96 | 96 | |||
C.krus vs C.para | 2.05-2.12; 2.48-2.56 | 79:95 | 98 | 100 | 21:27 | 100 | 100 | |||
C.krus vs C.trop | 1.46-1.51; 3.92-4.04 | 79:73 | 100 | 100 | 21:23 | 95 | 100 | |||
C.para vs C.trop | 3.76-3.82; 3.95-4.01 | 95:73 | 100 | 97 | 27:23 | 100 | 100 |
The left part of the table shows the 1H NMR chemical shift regions used for the individual pairwise classifiers and the sensitivity and specificity of the pairwise classifiers on the training set and a validation set. The numbers of isolates refer to the species indicated in column 1. The right part of the table lists the number of isolates in the two data sets that were not confidently (class assignment P > 60%) assigned to one of the species (fuzzy classification). C.alb, C. albicans; C.glab, C. glabrata; C.krus, C. krusei; C.para, C. parapsilosis; and C.trop, C. tropicalis.