TABLE 3.
Bacteria identified from DGGE profiles of 987-meter (2002) and 989-meter (2004) soil samples
| Band | GenBank accession no. | Phylum | Closest BLAST match (GenBank accession no.) | % Identity | Source |
|---|---|---|---|---|---|
| 987-5 | DQ648483 | Gemmatimonadetes | Uncultured bacterium clone AT425_EubC11 (AY053483) | 95 | Gas hydrate sediments (Gulf of Mexico) |
| Uncultured forest soil bacterium clone DUNssu177 (AY913247) | 95 | Forest soil (Germany) | |||
| 987-2 | DQ648479 | Gemmatimonadetes | Uncultured Gemmatimonadetes clone AKYH1514 (AY921705) | 96 | Agricultural soil (Minnesota) |
| 987-3b | DQ648481 | Actinobacteria | Uncultured soil bacterium clone 288-2 (AF423245) | 97 | Agricultural soil (Riverside, CA) |
| 987-5b2 | DQ648484 | Planctomycetes | Uncultured bacterium clone pGXAR2 (DQ256391) | 93 | Alkaline soil (China) |
| 987-4 | DQ648482 | Gemmatimonadetes | Uncultured Gemmatimonadetes clone AKYH1194 (AY921682) | 94 | Agricultural soil (Minnesota) |
| 987-3b2 | DQ648480 | Planctomycetes | Uncultured planctomycete (AJ431346) | 96 | Ikaite tufa columns (Greenland fjord) |
| 987-1b | DQ648478 | Thermomicrobia | Uncultured bacterium clone FBP267 (AY250872) | 96 | Rock surface (McMurdo Dry Valley, Antarctica) |
| 989-12b2 | DQ648485 | Gemmatimonadetes | Uncultured bacterium clone AT425_EubC11 (AY053483) | 94 | Gas hydrate sediments (Gulf of Mexico) |
| Uncultured forest soil bacterium clone DUNssu028 (AY913247) | 94 | Forest soil (Germany) | |||
| 989-9b2 | DQ648486 | Gemmatimonadetes | Uncultured Gemmatimonadetes clone AKYH1514 (AY921705) | 95 | Agricultural soil (Minnesota) |
| 989-8b2 | DQ648487 | Proteobacteria | Acidithiobacillus ferrooxidans 33020 (AJ278719) | 99 | Uranium waste piles (Germany) |
| Acidithiobacillus thiooxidans (AY495961) | 99 | Mine drainage (Wales, United Kingdom) | |||
| 989-7b | DQ648488 | Planctomycetes | Uncultured bacterium clone pGXAR2 (DQ256391) | 93 | Alkaline soil (China) |
| 989-11b2 | DQ648482a | Gemmatimonadetes | Uncultured Gemmatimonadetes clone AKYH1194 (AY921682) | 94 | Agricultural soil (Minnesota) |
a
The sequence of 989-11b2 is 100% similar to that of 987-4.