TABLE 6.
DNA and amino acid sequences of fimA deletion types D1, D2, and D3a
| Deletion type | DNA sequence | Amino acid sequence |
|---|---|---|
| Wild type | GCACGCTATAAGGCAACCGCCGCCGCCACGACGCCAGGCCAGGCTAAT | ARYKATAAATTPGQANADATFIMKYE |
| D1 | GCACGCTATAAGGCAACCGCCGCCGCCGCGACGCCAGGC-----TAAT | ARYKATAAAATPG |
| D2 | GCACGCTATAAGGCAACCGCCGCC---ACGACGCCAGGCCAGGCTAAT | ARYKATAA-TTPGQANADATFIMKYE |
| D3 | GCACGCTATAAGGCAACCGCCGCCGCG---ACGCCAGGCCAGGCTAAT | ARYKATAAA-TPGQANADATFIMKYE |
a
Nucleotide sequences surrounding the deletions in the 3′ region of fimA and amino acid sequences surrounding the deletions in the 3′ region of fimA are shown. The first amino acid corresponds to the first codon shown in the DNA sequence. Whereas the amino sequence includes the stop codon, the nucleotide sequence shown is missing the nucleotides encoding the last 10 amino acids.