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. 2006 Oct 6;92(1):23–33. doi: 10.1529/biophysj.106.084715

FIGURE 3.

FIGURE 3

Reconstructed potential of mean force for section 3 (backward pulling direction), calculated from the work profiles shown in the inset, using three different free-energy estimators. The mean work is represented by triangles, the second-order cumulant expansion by circles, and the exponential average by squares. Up to 2 Å, the exponential average and the second-order cumulant expansion show comparable results, with Wdiss <3 kBT(300K), meaning that the system is still sufficiently close to equilibrium. At the end of the section, the dissipative work is <8 kBT(300K). Here, both exponential average and second-order cumulant expansion show different results. The work profiles in the inset are smoothed for clarity.