TABLE 4.
Nucleotide and amino acid sequence comparison of the VP4 of the KJ44 and KJ75 strains with the VP4 of the other P genotypes
Strain | P type | Origin | % Identity with straina:
|
|||
---|---|---|---|---|---|---|
KJ44
|
KJ75
|
|||||
nt | aa | nt | aa | |||
BRV033 | P[1] | Bovine | 90.4 | 91.7 | 66.3 | 64.5 |
NCDV | P[1] | Bovine | 96.7 | 96.2 | 67.6 | 67.8 |
PTRV | P[1] | Simian | 94.4 | 93.6 | 66.0 | 63.9 |
SA11 | P[2] | Simian | 74.5 | 76.3 | 67.9 | 66.4 |
RRV | P[3] | Simian | 74.3 | 78.4 | 67.3 | 67.1 |
RV-5 | P[4] | Human | 67.4 | 60.2 | 64.4 | 59.5 |
CJN-M | P[5] | Bovine | 67.5 | 67.4 | 95.3 | 96.2 |
P343 | P[5] | Porcine | 67.6 | 64.8 | 92.0 | 91.9 |
UK | P[5] | Bovine | 65.7 | 67.4 | 89.8 | 92.4 |
VMRI | P[5] | Bovine | 67.6 | 67.8 | 95.2 | 96.9 |
Gottfried | P[6] | Porcine | 67.1 | 62.5 | 63.2 | 58.7 |
OSU | P[7] | Porcine | 71.9 | 76.3 | 64.3 | 61.3 |
Wa | P[8] | Human | 66.3 | 60.9 | 64.2 | 58.9 |
K8 | P[9] | Human | 65.1 | 64.0 | 66.2 | 58.2 |
69M | P[10] | Human | 71.3 | 72.6 | 65.7 | 67.8 |
KK3 | P[11] | Bovine | 56.7 | 42. | 54.5 | 41.0 |
FI23 | P[12] | Equine | 71.8 | 71.5 | 65.5 | 66.4 |
MDR13 | P[13] | Porcine | 68.6 | 64.0 | 65.4 | 57.5 |
MC35 | P[14] | Human | 65.2 | 64.0 | 62.5 | 57.5 |
Lp14 | P[15] | Ovine | 72.5 | 76.3 | 67.3 | 69.1 |
Eb | P[16] | Murine | 63.8 | 59.5 | 61.2 | 54.4 |
993/83 | P[17] | Bovine | 59.4 | 44.1 | 56.2 | 39.7 |
L338 | P[18] | Equine | 75.6 | 77.0 | 67.6 | 66.0 |
MC345 | P[19] | Human | 66.3 | 62.5 | 64.1 | 59.4 |
EHP | P[20] | Murine | 68.3 | 71.5 | 63.7 | 64.0 |
Hg18 | P[21] | Bovine | 70.1 | 67.4 | 65.3 | 61.3 |
160/01 | P[22] | Lapin | 67.0 | 61.9 | 65.5 | 58.9 |
A34 | P[23] | Porcine | 72.9 | 74.8 | 64.5 | 64.0 |
TUCH | P[24] | Simian | 71.4 | 74.6 | 66.3 | 68.4 |
Dhaka6 | P[25] | Human | 63.1 | 59.2 | 60.5 | 56.1 |
134/04-15 | P[26] | Porcine | 72.3 | 71.5 | 67.7 | 64.7 |
The nucleotide and amino acid sequence identities of VP4 between the KJ44 and KJ75 strains were 66.3% and 66.4%, respectively.