TABLE 2.
Determination of heterogeneity of VNTR at each MIRU locus of M. bovis clinical isolates
No. of TR copiesa | No. of isolates at VNTR-MIRU locus
|
|||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
2 | 4 | 10 | 16 | 20 | 23 | 24 | 26 | 27 | 31 | 39 | 40 | |
0 | ||||||||||||
1 | ||||||||||||
2 | 42 | 42 | 1 | 42 | 42 | 30 | 2 | 42 | 41 | |||
2′ | 6 | |||||||||||
3 | 33 | 40 | 12 | 37 | 1 | |||||||
3′ | 3 | |||||||||||
4 | 1 | 42 | 1 | 2 | ||||||||
5 | 41 | 1 | ||||||||||
6 | ||||||||||||
7 | ||||||||||||
8 | ||||||||||||
Allelic diversityb | 0.00 | 0.34 | 0.00 | 0.07 | 0.00 | 0.00 | 0.00 | 0.02 | 0.39 | 0.20 | 0.00 | 0.02 |
TR, tandem repeat. The symbol ′ indicates alleles devoid of 53-bp sequences at the 3′ terminus of the MIRU locus.
Allelic diversity (h) was calculated using the equation h = 1 − Σ xi2 [n/(n − 1)], where n is the number of isolates and xi the frequency of the ith allele at the locus (23).