Table 5.
Regulons of Zn cluster proteins.
| TF Name | Known Motif | Predicted Motifs | Num-Motifs | Ranking |
| GAL4 GAL4 chips |
CGGRnnRCYnYnCnCCG | CGG[11,11]CCG | 1634(3346) | 1/1 |
| CAT8 | CGGnnnnnnGGA | CGG[6,6]GGA | 1621(3356) | 147/13 |
| HAP1 | CGGnnnTAnCGGCGGnnnTAnCGGnnnTA | CGG[6,6]CGG | 1621(3356) | 111/146 |
| LEU3 | RCCGGnnCCGGY | CCG[4,4]CGG | 1588(3366) | 2/1 |
| LYS | WWWTCCRnYGGAWWW | TCC[3,3]GGA | 1605(3360) | 33/21 |
| PPR1 | WYCGGnnWWYKCCGAW | CGG[6,6]CCG | 1621(3356) | 1/2 |
| PUT3 | YCGGnAnGCGnAnnnCCGA CGGnAnGCnAnnnCCGA |
CGG[10,11]CCG | 727(4035) | 1/1 |
TF Name stands for transcription factor name; Known Motif stands for the known binding sites corresponding to the transcription factors in TF Name column; Predicted Motifs stands for the motifs predicted by EXMOTIF; Num-Motifs gives the final (original) number of motifs extracted (final is after pruning those motifs that are also frequent in the ORF regions); Ranking stands for the Z-score ranking based on support/weighted support.