TABLE 2.
Estimated genetic effects and their asymptotic standard errors (in parentheses) of QTL detected for the tiller number of the DH population at different stages
| Chromosome | Marker interval | Day | μ | a | φ | LR |
|---|---|---|---|---|---|---|
| 2 | RG654–RG256 | 50 | 2.264 (0.038) | 0.144 (0.048) | −0.027 (0.005) | 8.90* |
| 60 | 2.194 (0.038) | 0.165 (0.048) | −0.031 (0.005) | 11.82* | ||
| 70 | 2.061 (0.044) | 0.168 (0.056) | −0.027 (0.006) | 8.94* | ||
| 80 | 1.871 (0.039) | 0.165 (0.048) | −0.056 (0.005) | 11.54* | ||
| 90 | 1.847 (0.039) | 0.169 (0.048) | −0.058 (0.005) | 12.06* | ||
| 3 | CDO337–RZ337A | 20 | 1.589 (0.032) | −0.168 (0.054) | −0.104 (0.006) | 9.49* |
| 30 | 2.258 (0.029) | −0.168 (0.048) | −0.037 (0.005) | 11.44* | ||
| 40 | 2.488 (0.028) | −0.193 (0.045) | −0.027 (0.004) | 17.13** | ||
| 50 | 2.419 (0.029) | −0.149 (0.046) | −0.028 (0.005) | 9.95* | ||
| 60 | 2.361 (0.029) | −0.161 (0.046) | −0.032 (0.005) | 11.73* | ||
| 70 | 2.258 (0.032) | −0.223 (0.052) | −0.033 (0.005) | 17.25** | ||
| 80 | 2.048 (0.029) | −0.163 (0.047) | −0.057 (0.005) | 11.9* | ||
| 90 | 2.018 (0.030) | −0.159 (0.049) | −0.057 (0.005) | 9.93* | ||
| 3 | RZ519–Pgi-1 | 30 | 2.299 (0.027) | −0.204 (0.048) | −0.039 (0.005) | 11.56* |
| 40 | 2.516 (0.026) | −0.226 (0.045) | −0.029 (0.004) | 17.41** | ||
| 50 | 2.447 (0.027) | −0.197 (0.047) | −0.029 (0.004) | 11.83* | ||
| 60 | 2.383 (0.028) | −0.178 (0.047) | −0.032 (0.005) | 10.37* | ||
| 70 | 2.274 (0.032) | −0.234 (0.055) | −0.029 (0.006) | 13.05** | ||
| 80 | 2.065 (0.027) | −0.184 (0.047) | −0.058 (0.005) | 10.86* | ||
| 90 | 2.029 (0.029) | −0.153 (0.048) | −0.058 (0.005) | 8.03* | ||
| 4 | RZ565–RZ675 | 70 | 2.276 (0.038) | −0.216 (0.056) | −0.035 (0.006) | 13.72** |
| 80 | 2.078 (0.033) | −0.195 (0.048) | −0.061 (0.005) | 14.25** | ||
| 90 | 2.056 (0.033) | −0.198 (0.050) | −0.059 (0.006) | 14.05** | ||
| 5 | RZ67–RZ70 | 40 | 2.332 (0.037) | 0.140 (0.046) | −0.025 (0.004) | 8.96* |
| 50 | 2.264 (0.037) | 0.166 (0.047) | −0.028 (0.004) | 12.27* | ||
| 8 | Amy3D/E–RZ66 | 20 | 1.576 (0.032) | −0.175 (0.060) | −0.099 (0.007) | 8.85* |
| 30 | 2.247 (0.026) | −0.166 (0.050) | −0.039 (0.005) | 10.75* |
The significance is at level 5% through 1000 permutation tests. *, chromosomewide significance; **, genomewide significance; LR, the log-likelihood ratio.