Table 1. Result of the application of CSTfinder to the CDS dataset (see Materials and Methods).
| Class | N genes | Positives (%) | S | A | AA_sim | CPS |
|---|---|---|---|---|---|---|
| 97–100% | 399/399 | 100 | 30.3 | 6.4 | 234.2 | 3318.7 |
| 92–97% | 421/421 | 100 | 26.9 | 8.5 | 210.8 | 1117.2 |
| 85–92% | 413/413 | 100 | 26.7 | 11.9 | 202.8 | 727.3 |
| 73–85% | 383/383 | 100 | 24.7 | 17.1 | 188.4 | 389.6 |
| 40–73% | 249/263 | 95 | 23.0 | 20.3 | 161.8 | 270.8 |
| RANDOM set | 2.8 | 7.3 | 0.3 | 13.0 |
The number of synonymous (S) and non-synonymous (A) substitutions, the Blosum80 score (AA_sim) and the average CPS are shown for each group of genes, all values normalized to 100 codons.