Skip to main content
. 2003 Aug 1;31(15):4573–4581. doi: 10.1093/nar/gkg493

Table 2. Double-stranded oligonucleotides containing two uracil lesions.

Name Position of two Us relative to each other Sequence
  5′ or 3′ Base pairs apart  
U – 34 5′ 33 5′ TAAATACAAAGGATATCAGGTGGCCCCCGCTGAATUGGAAT 3′
      3′ TAAUTTATGTTTCCTATAGTCCACCGGGGGCGACTTAACCTTAGC 5′
U – 21 5′ 20 5′ TAAATACAAAGGATATCAGGTGGCCCCCGCTGAATUGGAAT 3′
      3′ TAATTTATGTTTCCTAUAGTCCACCGGGGGCGACTTAACCTTAGC 5′
U – 19 5′ 18 5′ TAAATACAAAGGATATCAGGUGGCCCCCGCTGAATTGGAAT 3′
      3′ TAAUTTATGTTTCCTATAGTCCACCGGGGGCGACTTAACCTTAGC 5′
U – 14 5′ 13 5′ TAAATACAAAGGATAUCAGGTGGCCCCCGCTGAATTGGAAT 3′
      3′ TAAUTTATGTTTCCTATAGTCCACCGGGGGCGACTTAACCTTAGC 5′
U – 8 5′ 7 5′ TAAATACAAAGGATATCAGGUGGCCCCCGCTGAATTGGAAT 3′
      3′ TAATTTATGTTTCCUATAGTCCACCGGGGGCGACTTAACCTTAGC 5′
U – 6 5′ 5 5′ TAAATACAAAGGATATCAGGUGGCCCCCGCTGAATTGGAAT 3′
      3′ TAATTTATGTTTCCTAUAGTCCACCGGGGGCGACTTAACCTTAGC 5′
U – 1 5′ 0 5′ TAAATACAAAGGATAUCAGGTGGCCCCCGCTGAATTGGAAT 3′
      3′ TAATTTATGTTTCCTAUAGTCCACCGGGGGCGACTTAACCTTAGC 5′
U + 1 3′ 0 5′ TAAATACAAAGGAUATCAGGTGGCCCCCGCTGAATTGGAAT 3′
      3′ TAATTTATGTTTCCTAUAGTCCACCGGGGGCGACTTAACCTTAGC 5′
U + 8 3′ 7 5′ TAAAUACAAAGGATATCAGGTGGCCCCCGCTGAATTGGAAT 3′
      3′ TAATTTATGTTTCCUATAGTCCACCGGGGGCGACTTAACCTTAGC 5′

When the two uracils are positioned 5′ to each other, the name is designated with a minus and when they are 3′ to each other, the name is designated with a plus. The number in the name designates the nucleotide position of the second uracil relative to the first.