Table 1. The simulation sets used to test error correction.
Sim. no. | Repeat copy no. | Repeat copy length | Unique seq. length | Repeat diff. (%) |
---|---|---|---|---|
1 | 0 | n/a | 150 000 | n/a |
2 | 10 | 2000 | 0 | 0.0 |
3 | 10 | 2000 | 0 | 1.0 |
4 | 10 | 2000 | 2000 | 0.0 |
5 | 10 | 2000 | 2000 | 1.0 |
6 | 50 | 2000 | 0 | 1.0 |
7 | 30 | 2000 | 0 | 1.0 |
8 | 6 | 10 000 | 0 | 1.0 |
9 | 6 | 10 000 | 40 000 | 1.0 |
Each set was run 10 times with different seeds for the gen_seq and sim_gun programs.