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. 2006 Nov 29;7:301. doi: 10.1186/1471-2164-7-301

Table 5.

GOstat results. Representation of different GO functional categories as determined by the GOstat program [48].

Woodfine replication markers 1
Function Islands > 1.75 1.75–1.5 < 1.5–1.25
Apoptosis (programmed cell death) over over
Frizzled-2 (WNT) signaling pathway over
Intracellular ligand-gated ion channel activity over
Transmembrane receptor protein tyrosine kinase activity over
Transmembrane receptor protein tyrosine phosphatase activity over
G-protein coupled receptor activity under under over
Rhodopsin-like receptor activity under under over
G-protein coupled receptor protein signaling pathway under under under over
Olfactory receptor activity under under over
Sensory perception of smell under under over
Proteasome complex (sensu Eukaryota) over
Cation-transporting ATPase activity over
Positive regulation of signal transduction over
Lipid biosynthesis over
Lipid metabolism over
Intracellular protein transport over
Receptor signaling protein activity over
Regulation of transcription factor activity over
Protein binding2 over under
Positive regulation of cellular process over under
Intracellular membrane-bound organelle over under
Cell surface receptor linked signal transduction under under over
Transmembrane receptor activity under over
Neurophysiological process under over
Nucleosome assembly under over
DNA binding over
DNA metabolism over
Antigen processing endogenous antigen via MHC class I2 over
MHC class I protein complex2 over
MHC class I receptor activity2 over
Calcium-mediated signaling over
Calcium ion binding under
Carbohydrate binding under
Muscle contraction under
Integral to membrane under over
Phosphoric ester hydrolase activity over
Organismal physiological process over
Cell communication over
Glutamate signaling pathway over
Keratin filament over
Sensory perception of taste over
Positive regulation of cellular metabolism under

1- Replication timing ratios determined by Woodfine et al. [18, 19].

2- Indicates functional categories overrepresented in genes associated with Woodfine et al. ([18, 19]) timing markers.

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