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. 2006 Nov 27;34(22):6438–6449. doi: 10.1093/nar/gkl761

Table 3.

Nucleotide composition of the transcripts with HeLa nuclear extract in the presence of cytidine analogues

Reaction Number of nucleotides nearest to GMP
Ap Gp Cp Up C*p
Urxn 22.7 ± 1.5 20.6 ± 0.4 19.9 ± 0.2 17.8 ± 1.6
ho4Crxn 25.1 ± 1.5 20.2 ± 0.8 18.3 ± 2.0 14.5 ± 1.4 2.9 ± 0.2
mo4Crxn 25.4 ± 1.6 19.0 ± 0.4 16.3 ± 2.3 17.4 ± 1.4 2.9 ± 0.8
rPrxn 27.8 ± 0.3 19.4 ± 1.6 18.5 ± 1.2 5.6 ± 0.1 9.7 ± 0.7
sc4Crxn 29.4 ± 1.7 16.8 ± 1.1 5.9 ± 1.1 19.3 ± 1.4 9.5 ± 0.2
rP/1/5/Urxn 29.0 ± 2.8 18.9 ± 0.4 18.9 ± 0.7 12.0 ± 1.6 1.8 ± 0.2
sc4C/1/5Crxn 28.0 ± 1.3 18.7 ± 0.7 17.3 ± 0.7 15.7 ± 1.3 1.3 ± 0.1

In the control reaction (Urxn), ATP, CTP, 32P-GTP and UTP at the molar ratio of 1:1:0.2:1 were added to the extract. In ho4Crxn, mo4Crxn, and rPrxn, the CTP analogues, ho4CTP, mo4CTP and rPTP, respectively, were added in place of UTP, while sc4CTP was added in place of CTP. In P/1/5/Urxn and sc4C/1/5Crxn, molar ratios of ATP, CTP, GTP, UTP and rPTP and sc4CTP were 1:1:0.2:0.2:1 and 1:0.2:0.2:1, respectively. The numbers of nucleotides 5′ to G were determined via the following equation: (radioactivity of each nucleotide)/(total radioactivity of all nucleotides) × [81 (total numbers of nucleotides at 5′ neighbor of G)]. The theoretical numbers of nucleotides are Ap = 25, Gp = 21, Cp = 23 and Up = 12.