Table 1.
Primer Sequences.
| Abbreviation | Name | Primer Sequence | Position | Annealing Temperature (°C) | Size (bp) | Accession Number | |
| GAPDH | Glyceraldehyde dehydrogenase | 5′ TGC ACC ACC AAC TGC TTA GC | 556 | 575 | 65 | 86 | NM_002046 |
| 3′ GGC ATG GAC TGT GGT CAT GAG | 642 | 622 | |||||
| EGP | Epithelial glycoprotein | 5′ GCT GGA ATT GTT GTG CTG GTT ATT TC | 1019 | 1044 | 65 | 152 | NM_002354 |
| 3′ TGT GTC CAT TTG CTA TTT CCC TTC TTC | 1171 | 1145 | |||||
| CD74 | CD74 antigen (invariant polypeptide, MHC class II antigen-associated) | 5′ GTG CGA CGA GAA CGG CAA CTA TC | 704 | 726 | 69 | 218 | NM_001025159 |
| 3′ GAA GAC CGC CTC TGC TGC TCT C | 901 | 922 | |||||
| HLA II DRA | MHC class II DR α | 5′ CCC AGA GAC TAC AGA GAA CGT GG | 714 | 736 | 69 | 265 | NM_019111 |
| 3′ GGG CTG GAA AAT GCT GAA GAT GAC | 979 | 956 | |||||
| HLA 1F | MHC class I F | 5′ GTT GCC CAC CAC CCC ATC TCT G | 628 | 649 | 65 | 371 | NM_018950 |
| 3′ GCT CTT CTT CCT CCA CAT CAC AG | 977 | 999 | |||||
| IFITM1 | IFN-induced transmembrane protein 3 (1–8 U) | 5′ CGT CGC CAA CCA TCT TCC TGT C | 530 | 509 | 69 | 246 | NM_003641 |
| 3′ TTC ACT CAA CAC TTC CTT CCC CAA | 284 | 307 | |||||
| HLA DQB1 | MHC class II DQ β1 | 5′ GCC TTA TCA TCC ATC ACA GGA GTC | 797 | 820 | 65 | 223 | NM_002123 |
| 3′ GTC ACA GCC ATC CGC CTC AAG G | 999 | 1020 | |||||
| IFITM3 | IFN-induced transmembrane protein 3 (1–8 U) | 5′ GTC CAA ACC TTC TTC TCT CCT GTC | 250 | 273 | 69 | 264 | NM_021034 |
| 3′ CGT CGC CAA CCA TCT TCC TGT C | 514 | 493 | |||||
| BST2 | Bone marrow stromal cell antigen 2 | 5′ GAG GTG GAG CGA CTG AGA AGA GA | 406 | 428 | 69 | 204 | NM_004335 |
| 3′ GTT CAA GCG AAA AGC CGA GCA GG | 610 | 588 | |||||
| β2M | β2-Microglobulin | 5′ GAG TAT GCC TGC CGT GTG AAC CA | 349 | 371 | 69 | 313 | NM_004048 |
| 3′ ACC TCT AAG TTG CCA GCC CTC CT | 640 | 662 | |||||
| CD59 | CD59 antigen p18–20 | 5′ CTG CTG CTC GTC CTG GCT GTC T | 149 | 170 | 69 | 370 | NM_000611 |
| 3′ GCT CTC CTG GTG TTG ACT TAG GG | 497 | 519 | |||||
| IFIT1 | IFN-induced protein with tetratricopeptide repeat 1 | 5′ CTG AAA ATC CAC AAG ACA GAA TAG C | 5 | 29 | 69 | 377 | NM_001001887 |
| 3′ GTC ACC AGA CTC CTC ACA TTT GCT | 359 | 382 | |||||
| IRF1 IFN-regulatory factor 1 | 5′ GTA CCG GAT GCT TCC ACC TCT CAC C | 524 | 545 | 69 | 105 | NM_002198 | |
| 3′ GCT GGA ATC CCC ACA TGA CTT CCT C | 605 | 629 | |||||
| IFI27 | IFNα-inducible protein 27 | 5′ GTT GTG ATT GGA GGA GTT GTG G | 226 | 247 | 65 | 193 | NM_005532 |
| 3′ GAG AGT CCA GTT GCT CCC AGT | 399 | 419 | |||||
| ERβ | Estrogen receptor β | 5′ GCT AAC CTC CTG ATG CTC CTG TCC | 1784 | 1807 | 65 | 204 | NM_001437 |
| 3′ AGC CCT CTT TGC TTT TAC TGT CCT CT | 1988 | 1963 |