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. 2006 Oct;8(10):862–878. doi: 10.1593/neo.06328

Table 1.

Primer Sequences.

Abbreviation Name Primer Sequence Position Annealing Temperature (°C) Size (bp) Accession Number
GAPDH Glyceraldehyde dehydrogenase 5′ TGC ACC ACC AAC TGC TTA GC 556 575 65 86 NM_002046
3′ GGC ATG GAC TGT GGT CAT GAG 642 622
EGP Epithelial glycoprotein 5′ GCT GGA ATT GTT GTG CTG GTT ATT TC 1019 1044 65 152 NM_002354
3′ TGT GTC CAT TTG CTA TTT CCC TTC TTC 1171 1145
CD74 CD74 antigen (invariant polypeptide, MHC class II antigen-associated) 5′ GTG CGA CGA GAA CGG CAA CTA TC 704 726 69 218 NM_001025159
3′ GAA GAC CGC CTC TGC TGC TCT C 901 922
HLA II DRA MHC class II DR α 5′ CCC AGA GAC TAC AGA GAA CGT GG 714 736 69 265 NM_019111
3′ GGG CTG GAA AAT GCT GAA GAT GAC 979 956
HLA 1F MHC class I F 5′ GTT GCC CAC CAC CCC ATC TCT G 628 649 65 371 NM_018950
3′ GCT CTT CTT CCT CCA CAT CAC AG 977 999
IFITM1 IFN-induced transmembrane protein 3 (1–8 U) 5′ CGT CGC CAA CCA TCT TCC TGT C 530 509 69 246 NM_003641
3′ TTC ACT CAA CAC TTC CTT CCC CAA 284 307
HLA DQB1 MHC class II DQ β1 5′ GCC TTA TCA TCC ATC ACA GGA GTC 797 820 65 223 NM_002123
3′ GTC ACA GCC ATC CGC CTC AAG G 999 1020
IFITM3 IFN-induced transmembrane protein 3 (1–8 U) 5′ GTC CAA ACC TTC TTC TCT CCT GTC 250 273 69 264 NM_021034
3′ CGT CGC CAA CCA TCT TCC TGT C 514 493
BST2 Bone marrow stromal cell antigen 2 5′ GAG GTG GAG CGA CTG AGA AGA GA 406 428 69 204 NM_004335
3′ GTT CAA GCG AAA AGC CGA GCA GG 610 588
β2M β2-Microglobulin 5′ GAG TAT GCC TGC CGT GTG AAC CA 349 371 69 313 NM_004048
3′ ACC TCT AAG TTG CCA GCC CTC CT 640 662
CD59 CD59 antigen p18–20 5′ CTG CTG CTC GTC CTG GCT GTC T 149 170 69 370 NM_000611
3′ GCT CTC CTG GTG TTG ACT TAG GG 497 519
IFIT1 IFN-induced protein with tetratricopeptide repeat 1 5′ CTG AAA ATC CAC AAG ACA GAA TAG C 5 29 69 377 NM_001001887
3′ GTC ACC AGA CTC CTC ACA TTT GCT 359 382
IRF1 IFN-regulatory factor 1 5′ GTA CCG GAT GCT TCC ACC TCT CAC C 524 545 69 105 NM_002198
3′ GCT GGA ATC CCC ACA TGA CTT CCT C 605 629
IFI27 IFNα-inducible protein 27 5′ GTT GTG ATT GGA GGA GTT GTG G 226 247 65 193 NM_005532
3′ GAG AGT CCA GTT GCT CCC AGT 399 419
ERβ Estrogen receptor β 5′ GCT AAC CTC CTG ATG CTC CTG TCC 1784 1807 65 204 NM_001437
3′ AGC CCT CTT TGC TTT TAC TGT CCT CT 1988 1963