Table 1.
Resolution, Å | Redundancy,* Å | Completeness (last shell), (%) | Rsym† | # Sites | Rscale‡ | Phasing power§
|
||
---|---|---|---|---|---|---|---|---|
Centric, iso | Acentric, iso/ano | |||||||
Native data | 2.4 | 6.4 | 99.7 (99.1) | 0.056 | ||||
MIR phasing (mean figure of merit = 0.71) | ||||||||
EMP (Tris buffer) | 3.5 | 3.2 | 96.3 (82.9) | 0.086 | 4 | 0.216 | 1.4 | 1.9/1.2 |
EMP (Hepes buffer) | 2.95 | 3.5 | 98.3 (97.1) | 0.075 | 8 | 0.130 | 1.3 | 1.7/0.94 |
APMA | 4.0 | 2.8 | 97.5 (97.9) | 0.098 | 4 | 0.201 | 0.98 | 1.3/0.90 |
(UO2)(NO3)2 | 3.2 | 3.2 | 98.8 (98.8) | 0.084 | 2 | 0.080 | 0.34 | 0.28/0.26 |
MAD phasing (EMP, mean figure of merit = 0.81) | ||||||||
λ1 = 1.00870 Å | 2.6 | 5.4 | 99.4 (99.1) | 0.064 | 4 | 0.023 | 1.7 | 2.1/2.6 |
λ2 = 1.00764 Å | 2.6 | 5.5 | 99.5 (99.1) | 0.070 | 4 | 0.022 | 1.3 | 1.6/2.3 |
λ3 = 0.99184 Å | 2.6 | 5.6 | 99.5 (99.2) | 0.076 | 4 | 0.034 | n.a. | n.a./2.6 |
λ4 = 1.00903 Å | 2.6 | 5.7 | 99.5 (99.1) | 0.063 | 4 | 0.034 | 1.1 | 1.5/2.0 |
Structure refinement | ||||||||
Resolution (Å), 8-2.4 | ||||||||
Reflections (I/σ(I) > 2), 28, 848 | ||||||||
Completeness (last shell), 82.9 (56.9) | ||||||||
R/Rfree, 0.243/0.298 | ||||||||
rms deviations, bond/angle, 0.009 Å/1.55° | ||||||||
Protein atoms, 4,618 | ||||||||
Sulfate ions, 5 | ||||||||
Water molecules, 150 |
APMA, 4-aminophenylmercuric acetate. n.a., not applicable.
Redundancy is the average number of observations for each unique reflection.
Rsym = Σ|In − 〈In〉|/ΣIn, where 〈In〉 is the average intensity over symmetric equivalents.
Rscale = Σ|IPH − IP|/ΣIP.
Phasing power 〈fh〉/〈E〉, where 〈fh〉 and 〈E〉 are the rms deviation of the heavy-atom structure factor and the lack of closure error, respectively.