Table 1.

Methods available in the Data Retrieval Service

Methods	Description
getDatabases	Returns a string array of the pedant2 databases available for data retrieval
getProteinSequencesbyDb	Takes the database name as a parameter and returns all protein codes and sequences in the db as a 2D string array
getReportbyDbCodeandContig	Takes the database name, protein code and contig as parameters and returns the report data as a ReportItem bean
areCodesUniqueWithinDb	Takes the database name as a parameter and returns a Boolean
getRawHitsbyDbCodeandMethod	Takes the database name, protein code and method as parameters and returns the code and raw output for that method as a 2D string array
getRawHitsbyDbCodeContigandMethod	Takes the database name, protein code, contig and method as parameters and returns the code and raw output for that method as a 2D string array
getProteinCodesbyDb	Takes the database name as a parameter and returns the protein codes as a string array
getProteinCodesandContigsbyDb	Takes the database name as a parameter and returns the protein codes and contigs as a 2D string array
getMethodsbyDb	Takes the database name as a parameter and returns the available methods as a string array