Table 4.

Allelic diversity and proportion of loci in linkage disequilibrium in the four clusters inferred using Structure (n = 346).

Cluster	Number of individuals	N A	HE (SE)	Number of pairs of loci in LD (# of comparisons)
Whole sample	346	20.7	0.747 (0.300)	29 (78)
1	83	12.8	0.699 (0.277)	4 (77)
2	99	13.9	0.696 (0.287)	4 (78)
3	114	13.1	0.680 (0.308)	1 (78)
4	50	11.0	0.741 (0.291)	5 (75)

Clusters 1 to 4 refer respectively to red, blue, yellow and green symbols in Figure 1.

Pairs of markers where considered in significant LD using the threshold α = 0.05 after using a sequential Bonferroni correction