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. 2006 Dec 20;1(1):e44. doi: 10.1371/journal.pone.0000044

Table 4. HCMp's In Model Organisms And Selected Parasite Genomes.

graphic file with name pone.0000044.t004.jpg

Organism Genome Size (Mbp) ≥10% Cysteine (>400 aa) Type1 TM (>400 aa) HCMp's % Genome*
G. lamblia a 12 173 152 61 0.63
T. thermophila b 104 285 45 30 0.11
H. sapiens c 2,910 28 9 7 0.025
E. histolytica d 20 28 17 6 0.06
D. melanogaster e 180 18 6 4 0.03
C. elegans f 97 39 9 4 0.02
A. thaliana 125 6 4 0
T. gondii 80 7 3 0
C. rheinhardtii 120 3 1 0
T. brucei 30 3 1 0
P. falciparum 23 0 0 0
S. cerevisiae 12 0 0 0
C. parvum 10 0 0 0
a

G. lamblia : Giardia genome ORF numbers from GiardiaDB (www.mbl.edu/Giardia):

40376,11309,25816,32607,10659,16318,15317,103454,101805,91707,7715,15008,17328,22547,9620,14017,15475,39904,16721,16842,15521,16374,91099,24880,27717,112126,113987,114891,114042,114089,112828,114930,114617,112633,137727,113213,113836,113531,114626,114991,16936,16716,21321,137715,112432,15250,41942,113512,114470,114180,113319,113416,112673,112135,115066,112584,113297,113801,137672,112305,11852

b

T. thermophila : gi|89285635,gi|89286821,gi|89288525,gi|89288637,gi|89288695,gi|89289016,gi|89289736,gi|89290140,gi|89290464,gi|89291419,gi|89291425,gi|89292518,gi|89292756,gi|89293702,gi|89295361,gi|89295485,gi|89295487,gi|89295488,gi|89295496,gi|89295499,gi|89295601,gi|89296595,gi|89299183,gi|89300019,gi|89302034, gi|89302083,gi|89304603,gi|89304693,gi|89306011,gi|89306012

c

H. sapiens : gi|21704279,gi|21704277,gi|14192943,gi|14192941,gi|5453766,gi|10092639,gi|4503667

d

E. histolytica : gi|67476461,gi|67473447,gi|67476571,gi|67467895,gi|67476995,gi|67464660

e

D. melanogaster : CG33196,CG6124,CG2086,CG15011 from FlyBase (http://flybase.org/)

f

C. elegans : gi|25143262,gi|25150348,gi|25150352,gi|25150359

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% Genome defined as number of HCMp's/predicted ORFs.