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. Author manuscript; available in PMC: 2007 Jan 8.
Published in final edited form as: Proteins. 2005 Aug 15;60(3):464–484. doi: 10.1002/prot.20470

TABLE I.

Relative Energies and Positions of Four Minima Found in Energy Surface of Alanine Dipeptide in Water as Represented by SCP–ISM/CHARMM Force Fieldsa

C7eq C7ax αR αL
PAR22b 0.0 [−95,165] 3.5 [75,−85] 0.6 [−90,−75] 7.7 [60,40]
CMAP 0.0 [−162,164] 3.8 [56,−154] 1.2 [−104,0] 2.8 [63,45]
a

Calculations were carried out with version c31b1; all energies are in kcal/mol; angles (in square brackets) in degrees. Energies and angles were obtained with the software Origin; because of the grid spacing in the (φ,ψ)-plane, these values should be considered approximate.

b

The small differences observed with respect to values reported in ref. 34 are mainly due to the pairwise energy function of the current version of the SCP–ISM introduced in ref. 8 which was used here both in the minimization and in the calculation of energies (minimization in vacuum was used in ref. 34, and a non-pairwise energy function was used in the energy calculations).