Table 4.

Frequency of the alternatively transcribed sense and antisense tags for the coding regions of M. grisea.

	Sense tags				Antisense tags
	MPSS		RL-SAGE		MPSS		RL-SAGE
No. of alternative tags	Appressoria	Mycelia	Mycelia	No of antisense tags/gene	Appressoria	Mycelia	Mycelia
≥ 5	28	124	46	≥ 5	1	111	14
4	26	117	76	4	1	90	23
3	168	394	197	3	57	191	108
2	715	992	636	2	173	455	293
No of genes with ≥ 2 tags (%)	937 (20.8)	1,631 (35.0)	955 (27.5)	No of genes with ≥ 2 tags (%)	232 (19.9)	847 (31.8)	438 (24.0)
No of genes with single tag (%)	3,566 (79.2)	3,028 (65.0)	2,518 (72.5)	No of genes with single tag (%)	933 (80.1)	1,809 (68.2)	1,389 (76.0)