Table 1.
Company | Software | URL |
Enterprise-wide | ||
GeneData | Expressionist | www.genedata.com |
Informax | Genomax | www.informaxinc.com |
LION Bioscience | ArrayScout | www.lionbioscience.com |
NetGenics | Synergy | www.netgenics.com |
Rosetta Inpharmatics | Rosetta resolver | www.rii.com |
Desktop | ||
Biodiscovery | Genesight | www.biodiscovery.com |
Silicon Genetics | Genespring | www.sigenetics.com |
Web based | ||
Genome Biology | Bioarray software environment | Genomebiology.com/2002/3 |
AMADA | Analysing microarray data | Web.hku.hk/xxia/software |
Albert Einstein College of Medicine | GNU and GPL scatterplots | biotech.aecon.yu.edu |
Ontario Cancer Institute | Microarray database | www.uhnres.utoronto.ca/microarray |
European Bioinformatics Institute | ArrayExpress | www.ebi.ac.uk/arrayexpress |
National Center Biotechnology Information NIH | Gene expression omnibus (GEO) | ncbi.nlm.nih.gov/geo |
Microarray Gene Expression Data Society | MGED | www.mged.org |
MIT Department of Biology | Microarray scanning | Web.mit.edu/biology/AbCam |
Spotfire | Array explorer | www.spotfire.com |
A growing appreciation of the microarray results has led to the creation of public repositories for microarray data. More information on microarray databases is given in reference 13.