Table 1.
Crystals, Unit Cells, and Data Sets | |||||
APSr SAD | APSr MAD | APSr Native | |||
Space Group | P1 | P1 | P1 | ||
a, b, c (Å) | 60.25 103.27 140.26 | 60.24 102.94 140.04 | 60.03 102.79 139.37 | ||
α, β, γ(deg) | 90.36 102.38 89.95 | 90.44 102.45 89.96 | 90.09 102.57 89.95 | ||
SSRL Beam Line | BL 9-2 | BL 9-2 | BL 9-1 | ||
Peak | Peak | Inflection | Remote | ||
Wavelength (Å) | 1.731 | 1.737 | 1.742 | 1.348 | 0.984 |
Resolution (Å) | 3.01 | 3.13 | 3.13 | 2.99 | 2.70 |
Observations | 391,272 | 247,396 | 223,050 | 280,915 | 168,061 |
Reflections | 61,646 | 56,889 | 55,324 | 65,516 | 85,404 |
Redundancy | 6.3 | 4.3 | 4.0 | 4.3 | 2.0 |
Completeness (%) [1] | 94.0 (89.0) | 98.4 (97.2) | 95.6 (93.9) | 98.5 (97.8) | 95.6 (95.6) |
<I>/<σI> | 4.5 (2.1) | 5.0 (2.1) | 5.3 (2.2) | 4.1 (2.2) | 5.9 (1.9) |
Rsymm(I) | 0.129 (0.272) | 0.146 (0.325) | 0.137 (0.299) | 0.172 (0.307) | 0.105 (0.337) |
MAD Phasing | |||||
f ′ (e) | −5.51 | −8.45 | −0.29 | ||
f ″ (e) | 4.37 | 2.12 | 2.57 | ||
8 site model at 4.5 Å | |||||
Phasing Power | 1.65 | 2.05 | 0.66 | ||
Figure of Merit | 0.63 | ||||
32 site model at 3.5 Å | |||||
Phasing Power | 1.26 | 1.49 | 0.38 | ||
Figure of Merit | 0.53 | ||||
Refinement | |||||
Resolution Range (Å) | 50.0 – 2.70 | ||||
Reflections > 0.0 σF | 85,402 | ||||
R-factor | 0.229 | ||||
Rfree (% of data) | 0.265 (4.7) | ||||
rmsd deviation bonds (Å) | 0.008 | ||||
rmsd deviation angles (deg) | 1.46[2] | ||||
Model | |||||
No. of residues / <B-factor> (Å2) [3] | |||||
Subunit A | 222 / 31.8 | FS4 / 21.6 | --- | ||
Subunit B | 223 / 46.0 | FS4 / 33.5 | APS / 108.9 | ||
Subunit C | 222 / 28.3 | FS4 / 22.9 | --- | ||
Subunit D | 223 / 45.2 | FS4 / 33.7 | APS / 109.8 | ||
Subunit E | 222 / 28.4 | FS4 / 20.2 | --- | ||
Subunit F | 223 / 46.2 | FS4 / 32.6 | APS / 111.0 | ||
Subunit G | 222 / 32.0 | FS4 / 20.2 | --- | ||
Subunit H | 223 / 46.5 | FS4 / 33.1 | APS / 106.8 | ||
H2O molecules | 151 / 22.1 |
Values for highest resolution shell in parentheses.
Ramachandran plot: 87.9% of residues in most favored regions; 11.6% in allowed regions; 0.5% in generously allowed regions; 0.1% in disfavored regions.
The Wilson B value for 2.70 Å native data is 47.7 Å2.