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Number of Differentially Expressed Genes*
| Normal vs. Tumor | Normal vs. Adjacent | Adjacent vs. Tumor | |
|---|---|---|---|
| Upregulated | 2,340 | 2,270 | 1,127 |
| Downregulated | 1,730 | 2,036 | 140 |
| Total Differentially expressed Genes | 4,070 | 4,306 | 1,267 |
(among 8398 genes that have average intensities larger than 100) obtained from SAM analysis in normal vs. tumor, normal vs. adjacent, and adjacent vs. tumor comparisons. The FDR threshold is chosen to be 0.05.
