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. 1999 Aug 3;96(16):9062–9067. doi: 10.1073/pnas.96.16.9062

Figure 6.

Figure 6

The transition probability P calculated at 300 K vs. time along the 400-K trajectory shown in Figs. 1 and 2 for the (Left) FH and (Right) SU transitions for conformations in the transition region. The solid line is the order parameter used to discriminate states, i.e., (Left) hydrogen bonds NHB and (Right) core size Rcore. The dashed line is a fit to P = (erf[(t-tTS)/ttrans]+1)/2, where t is time, t0 is the time at which P = 1/2 (that is, near the TS) and ttrans is the duration of the transition region. We see that PF⇌H(C) and PSU(C) change sharply from 0 to 1 over a few ps time interval (with ttrans = 7.0 and 1.3 ps, respectively, at 400 K). Transition probabilities for this 400-K run calculated at 400 K are indistinguishable within error from the 300-K probabilities presented here.