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. 2003 May;52(5):647–652. doi: 10.1136/gut.52.5.647

Table 1.

Primers used for reverse transcription-polymerase chain reaction (RT-PCR), minisequencing, and direct sequencing

PCR primers for minisequencing
Exon Reverse primer Forward primer Product (bp)
1 5′-AGATATGGGTGGTTCTAGCAG 5′-(biotin)ACCTAGTTGGGATCTGGTTCA 217
2 5′-AGATATGGGTGGTTCTAGCAG 5′-(biotin)ACCTAGTTGGGATCTGGTTCA 217
6 5′-TCAATCAGCTTGTTGTAGTAGG 5′-(biotin)CTCTGCCTATCAGAGAATCTG 378
10 5′-ATGAGCCTCACGTAGTAGTTC 5′-(biotin)GCAGCTTCTGCTGCATATCAG 278
10 5′-ATGAGCCTCACGTAGTAGTTC 5′-(biotin)GCAGCTTCTGCTGCATATCAG 278
13 5′-ACAGTGGTGTAGTGATTGAAC 5′-(biotin)AGGAGATATGTTCAGTTCATG 206
17 5′-(biotin)AAATGCCAAGCCACAGACTCC 5′-CATCAGCGAAGTTCTACGCCT 224
Detection primers for minisequencing SNP
1 5′-TTTTCTGTGGGCATCACTGAG GA
2 5′-TATCTTCAGCTCGCAGGACAA CT
6 5′-AGCGTCGCTTGGCCCTCA GT
10 det1: 5′-TGCGAGACCAGGAGATGGA GA
10 det2: 5′-GAAAAACGGTAGTGGGACAC GA
13 5′-ATCCGCGTCTTCATCACCTCA CT
17 5′-TTGTCTCCACCAGCCAGATGC CT
Sequencing primers Product (bp)
Reverse primer Forward primer Product (bp)
1 5′-TGTCGAATCTGCTCTAAGGAG 5′-ACCTAGTTGGGATCTGGTTCA 232
2 5′-CTCTCCTCAGATGTTACAGGT 5′-TCACCTGCTGTTCGTGTCTCT 155
6 5′-CAGCCAATGTCCTTTCTCCTCCAA 5′-TAAACACAGTAGTCATCCGATGGG 860
10 5′-TGCTGTTCCTGCATGAGGAC 5′-CGTCCTGACTTGAGACTCAC 433
13 5′-GCTCAGTCATGGTAACTTGC 5′-TGGACACTGAAGCTGCAACA 360
17 5′-AAATGCCAAGCCACAGACTCC 5′-CTTCACTCAGAGGCTCCTGAC 309

SNP, single nucleotide polymorphism.