Table 1.
Primers used for reverse transcription-polymerase chain reaction (RT-PCR), minisequencing, and direct sequencing
PCR primers for minisequencing | |||
Exon | Reverse primer | Forward primer | Product (bp) |
1 | 5′-AGATATGGGTGGTTCTAGCAG | 5′-(biotin)ACCTAGTTGGGATCTGGTTCA | 217 |
2 | 5′-AGATATGGGTGGTTCTAGCAG | 5′-(biotin)ACCTAGTTGGGATCTGGTTCA | 217 |
6 | 5′-TCAATCAGCTTGTTGTAGTAGG | 5′-(biotin)CTCTGCCTATCAGAGAATCTG | 378 |
10 | 5′-ATGAGCCTCACGTAGTAGTTC | 5′-(biotin)GCAGCTTCTGCTGCATATCAG | 278 |
10 | 5′-ATGAGCCTCACGTAGTAGTTC | 5′-(biotin)GCAGCTTCTGCTGCATATCAG | 278 |
13 | 5′-ACAGTGGTGTAGTGATTGAAC | 5′-(biotin)AGGAGATATGTTCAGTTCATG | 206 |
17 | 5′-(biotin)AAATGCCAAGCCACAGACTCC | 5′-CATCAGCGAAGTTCTACGCCT | 224 |
Detection primers for minisequencing | SNP | ||
1 | 5′-TTTTCTGTGGGCATCACTGAG | GA | |
2 | 5′-TATCTTCAGCTCGCAGGACAA | CT | |
6 | 5′-AGCGTCGCTTGGCCCTCA | GT | |
10 | det1: 5′-TGCGAGACCAGGAGATGGA | GA | |
10 | det2: 5′-GAAAAACGGTAGTGGGACAC | GA | |
13 | 5′-ATCCGCGTCTTCATCACCTCA | CT | |
17 | 5′-TTGTCTCCACCAGCCAGATGC | CT | |
Sequencing primers | Product (bp) | ||
Reverse primer | Forward primer | Product (bp) | |
1 | 5′-TGTCGAATCTGCTCTAAGGAG | 5′-ACCTAGTTGGGATCTGGTTCA | 232 |
2 | 5′-CTCTCCTCAGATGTTACAGGT | 5′-TCACCTGCTGTTCGTGTCTCT | 155 |
6 | 5′-CAGCCAATGTCCTTTCTCCTCCAA | 5′-TAAACACAGTAGTCATCCGATGGG | 860 |
10 | 5′-TGCTGTTCCTGCATGAGGAC | 5′-CGTCCTGACTTGAGACTCAC | 433 |
13 | 5′-GCTCAGTCATGGTAACTTGC | 5′-TGGACACTGAAGCTGCAACA | 360 |
17 | 5′-AAATGCCAAGCCACAGACTCC | 5′-CTTCACTCAGAGGCTCCTGAC | 309 |
SNP, single nucleotide polymorphism.